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MassBank: a public repository for sharing mass spectral data for life sciences.
TLDR
MassBank is the first public repository of mass spectra of small chemical compounds for life sciences and provides a merged spectrum for each compound prepared by merging the analyzed ESI-MS(2) data on an identical compound under different collision-induced dissociation conditions. Expand
Functional genomics by integrated analysis of metabolome and transcriptome of Arabidopsis plants over-expressing an MYB transcription factor.
TLDR
The functional genomics approach through the integration of metabolomics and transcriptomics presented here provides an innovative means of identifying novel gene functions involved in plant metabolism. Expand
Crystal Structure of the Complex of Human Epidermal Growth Factor and Receptor Extracellular Domains
TLDR
The crystal structure of a 2:2 complex of human EGF and the EGFR extracellular region has been determined at 3.3 A resolution and the unique "receptor-mediated dimerization" was verified by EGFR mutagenesis. Expand
Omics-based identification of Arabidopsis Myb transcription factors regulating aliphatic glucosinolate biosynthesis
TLDR
Two R2R3-Myb transcription factors are found that positively control the biosynthesis of GSLs in Arabidopsis thaliana by an integrated omics approach and a working model for regulation of GSL production involving these genes, renamed Production of Methionine-Derived Glucosinolate (PMG) 1 and 2 are postulated. Expand
ATTED-II: a database of co-expressed genes and cis elements for identifying co-regulated gene groups in Arabidopsis
TLDR
An Arabidopsis thaliana trans-factor and cis-element prediction database that provides co-regulated gene relationships based on co-expressed genes deduced from microarray data and the predicted cis elements to help researchers to clarify the function and regulation of particular genes and gene networks is reported. Expand
Members of the LBD Family of Transcription Factors Repress Anthocyanin Synthesis and Affect Additional Nitrogen Responses in Arabidopsis[W][OA]
TLDR
The results identify LBD37 and its two close homologs as novel repressors of anthocyanin biosynthesis and N availability signals in general and show that, besides being developmental regulators, LBD genes fulfill roles in metabolic regulation. Expand
Global expression profiling of sulfur-starved Arabidopsis by DNA macroarray reveals the role of O-acetyl-l-serine as a general regulator of gene expression in response to sulfur nutrition.
TLDR
A positive correlation between the changes of expression levels by sulfur deficiency and by OAS treatment among the clones tested is revealed, suggesting that mRNA accumulation of a number of genes under sulfur deficiency is mainly controlled by Oas concentrations in tissues. Expand
Sulfur assimilation in photosynthetic organisms: molecular functions and regulations of transporters and assimilatory enzymes.
TLDR
This review provides up-to-date knowledge in functions and regulations of sulfur assimilation in plants and algae, focusing on sulfate transport systems and metabolic pathways for sulfate reduction and synthesis of downstream metabolites with diverse biological functions. Expand
Two distinct high-affinity sulfate transporters with different inducibilities mediate uptake of sulfate in Arabidopsis roots.
TLDR
It is reported that uptake of sulfate at the outermost cell layers of Arabidopsis root is associated with the functions of highly and low-inducible sulfate transporters, Sultr1;1 and SultR1;2, respectively. Expand
The flavonoid biosynthetic pathway in Arabidopsis: structural and genetic diversity.
TLDR
This review describes the state-of-art of flavonoid biosynthetic pathway in Arabidopsis regarding both structural and genetic diversity, focusing on the genes encoding enzymes for the biosynthesis reactions and vacuole translocation. Expand
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