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- Publications
- Influence
MODELTEST: testing the model of DNA substitution
- D. Posada, K. Crandall
- Computer Science, Medicine
- Bioinform.
- 1998
TLDR
TCS: a computer program to estimate gene genealogies
- M. Clement, D. Posada, K. Crandall
- Biology, Medicine
- Molecular ecology
- 1 October 2000
A cladistic analysis of phenotypic associations with haplotypes inferred from restriction endonuclease mapping and DNA sequence data. III. Cladogram estimation.
- A. Templeton, K. Crandall, C. Sing
- Biology, Medicine
- Genetics
- 1 October 1992
We previously developed a cladistic approach to identify subsets of haplotypes defined by restriction endonuclease mapping or DNA sequencing that are associated with significant phenotypic… Expand
GeoDis: a program for the cladistic nested analysis of the geographical distribution of genetic haplotypes
- D. Posada, K. Crandall, A. Templeton
- Biology, Medicine
- Molecular ecology
- 1 April 2000
The central focus of population genetics is the study of the distribution of the genetic variation within and among populations. This endeavour has often been accomplished by the use of genealogies… Expand
Evaluation of methods for detecting recombination from DNA sequences: Computer simulations
- D. Posada, K. Crandall
- Biology, Medicine
- Proceedings of the National Academy of Sciences…
- 20 November 2001
Recombination is a key evolutionary process that shapes the architecture of genomes and the genetic structure of populations. Although many statistical methods are available for the detection of… Expand
Selecting the best-fit model of nucleotide substitution.
- D. Posada, K. Crandall
- Biology, Medicine
- Systematic biology
- 1 August 2001
Despite the relevant role of models of nucleotide substitution in phylogenetics, choosing among different models remains a problem. Several statistical methods for selecting the model that best fits… Expand
A modified bootscan algorithm for automated identification of recombinant sequences and recombination breakpoints.
- D. Martin, D. Posada, K. Crandall, C. Williamson
- Biology, Medicine
- AIDS research and human retroviruses
- 21 January 2005
We have developed a modified BOOTSCAN algorithm that may be used to screen nucleotide sequence alignments for evidence of recombination without prior identification of nonrecombinant reference… Expand
TreeSAAP: Selection on Amino Acid Properties using phylogenetic trees
- Steve Woolley, Justin Johnson, Matthew J. Smith, K. Crandall, D. McClellan
- Computer Science, Medicine
- Bioinform.
- 22 March 2003
TLDR
Many species in one: DNA barcoding overestimates the number of species when nuclear mitochondrial pseudogenes are coamplified
- H. Song, J. E. Buhay, M. Whiting, K. Crandall
- Biology, Medicine
- Proceedings of the National Academy of Sciences
- 9 September 2008
Nuclear mitochondrial pseudogenes (numts) are nonfunctional copies of mtDNA in the nucleus that have been found in major clades of eukaryotic organisms. They can be easily coamplified with… Expand
Multiple and ancient origins of the domestic dog.
- C. Vilà, P. Savolainen, +6 authors R. Wayne
- Biology, Medicine
- Science
- 13 June 1997
Mitochondrial DNA control region sequences were analyzed from 162 wolves at 27 localities worldwide and from 140 domestic dogs representing 67 breeds. Sequences from both dogs and wolves showed… Expand