Jure Dobnikar

Learn More
Lévy walks as a random search strategy have recently attracted a lot of attention, and have been described in many animal species. However, very little is known about one of the most important issues, namely how Lévy walks are generated by biological organisms. We study a model of the chemotaxis signaling pathway of E. coli, and demonstrate that stochastic(More)
Escherichia coli motion is characterized by a sequence of consecutive tumble-and-swim events. In the absence of chemical gradients, the length of individual swims is commonly believed to be distributed exponentially. However, recently there has been experimental indication that the swim-length distribution has the form of a power-law, suggesting that(More)
We study some new universal aspects of diffusion in chaotic systems , especially such having very large Lyapunov coefficients on the chaotic (indecomposable, topologically transitive) component. We do this by dis-cretizing the chaotic component on the Surface-of-Section in a (large) number N of simplectically equally big cells (in the sense of equal(More)
We simulate the dynamics of a suspension of bacterial swimmers, which chemotactically sense gradients in either ambient or self-secreted attractants (e.g. nutrient or aspartate respectively), or in both. Unlike previous mean field models based on a set of continuum partial differential equations, our model resolves single swimmers and therefore incorporates(More)
The solid-liquid phase-diagram of charge-stabilized colloidal suspensions is calculated using a technique that combines a continuous Poisson-Boltzmann description for the microscopic electrolyte ions with a molecular-dynamics simulation for the macroionic colloidal spheres. While correlations between the microions are neglected in this approach, many-body(More)
Gelation and densification of calcium-silicate-hydrate take place during cement hydration. Both processes are crucial for the development of cement strength, and for the long-term evolution of concrete structures. However, the physicochemical environment evolves during cement formation, making it difficult to disentangle what factors are crucial for the(More)
In living systems proteins are typically found in crowded environments where their effective interactions strongly depend on the surrounding medium. Yet, their association and dissociation needs to be robustly controlled in order to enable biological function. Uncontrolled protein aggregation often causes disease. For instance, cataract is caused by the(More)
  • 1