Jung-Im Won

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As the total amount of traffic data in networks has been growing at an alarming rate, there is currently a substantial body of research that attempts to mine traffic data with the purpose of obtaining useful information. For instance, there are some investigations into the detection of Internet worms and intrusions by discovering abnormal traffic patterns.(More)
This paper proposes an indexing technique for fast retrieval of similar subsequences using the time warping distance. The time warping distance is a more suitable similarity measure than the Euclidean distance in many applications where sequences may be of different lengths and/or different sampling rates. The proposed indexing technique employs a(More)
Exact match queries, wildcard match queries, and k-mismatch queries are widely used in various molecular biology applications including the searching of ESTs (Expressed Sequence Tags) and DNA transcription factors. In this paper, we suggest an efficient indexing and processing mechanism for such queries. Our indexing method places a sliding window at every(More)
In this paper, we propose an accurate and efficient method for approximate subsequence search in large DNA databases. The proposed method basically adopts a binary trie as its primary structure and stores all the window subsequences extracted from a DNA sequence. For approximate subsequence search, it traverses the binary trie in a breadth-first fashion and(More)
This paper addresses the problem of timestamped event sequence matching, a new type of similar sequence matching that retrieves the occurrences of interesting patterns from timestamped sequence databases. The sequential-scan-based method, the trie-based method, and the method based on the iso-depth index are well-known approaches to this problem. In this(More)
Over the past several decades, biologists have conducted numerous studies examining both general and specific functions of proteins. Generally, if similarities in either the structure or sequence of amino acids exist for two proteins, then a common biological function is expected. Protein function is determined primarily based on the structure rather than(More)