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High-quality draft assemblies of mammalian genomes from massively parallel sequence data
- S. Gnerre, Iain Maccallum, D. Jaffe
- BiologyProceedings of the National Academy of Sciences
- 27 December 2010
TLDR
Chromosome-scale scaffolding of de novo genome assemblies based on chromatin interactions
- Joshua N. Burton, Andrew C. Adey, Rupali Patwardhan, R. Qiu, J. Kitzman, J. Shendure
- BiologyNature Biotechnology
- 1 December 2013
TLDR
Single-molecule sequencing and chromatin conformation capture enable de novo reference assembly of the domestic goat genome
- D. Bickhart, B. Rosen, Timothy P. L. Smith
- BiologyNature Genetics
- 1 April 2017
TLDR
The haplotype-resolved genome and epigenome of the aneuploid HeLa cancer cell line
- Andrew C. Adey, Joshua N. Burton, J. Shendure
- BiologyNature
- 3 May 2013
TLDR
A Year of Infection in the Intensive Care Unit: Prospective Whole Genome Sequencing of Bacterial Clinical Isolates Reveals Cryptic Transmissions and Novel Microbiota
- D. Roach, Joshua N. Burton, S. Salipante
- Biology, MedicinePLoS genetics
- 1 July 2015
TLDR
ALLPATHS 2: small genomes assembled accurately and with high continuity from short paired reads
- Iain Maccallum, Dariusz Przybylski, D. Jaffe
- BiologyGenome Biology
- 1 October 2009
TLDR
Species-Level Deconvolution of Metagenome Assemblies with Hi-C–Based Contact Probability Maps
- Joshua N. Burton, Ivan Liachko, M. Dunham, J. Shendure
- BiologyG3: Genes, Genomes, Genetics
- 22 May 2014
TLDR
In vitro, long-range sequence information for de novo genome assembly via transposase contiguity.
- Andrew C. Adey, J. Kitzman, J. Shendure
- BiologyGenome research
- 19 October 2014
TLDR
Accurate identification of centromere locations in yeast genomes using Hi-C
- N. Varoquaux, Ivan Liachko, William Stafford Noble
- BiologyNucleic acids research
- 4 May 2015
TLDR
Targeted enrichment and high-resolution digital profiling of mitochondrial DNA deletions in human brain
- S. D. Taylor, Nolan G. Ericson, J. Bielas
- BiologyAging cell
- 11 September 2013
TLDR
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