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- Joseph Rusinko, Matthew McPartlon
- Journal of theoretical biology
- 2017

Recent theoretical work has demonstrated that Neighbor Joining applied to concatenated DNA sequences is a statistically consistent method of species tree reconstruction. This brief note compares theâ€¦ (More)

- Jane Ivy Coons, Joseph Rusinko
- Journal of theoretical biology
- 2016

The path interval distance accounts for global congruence between locally incongruent trees. We show that the path interval distance provides a lower bound for the nearest neighbor interchangeâ€¦ (More)

We show that the cophylogenetic distance, k-interval cospeciation, is distinct from other metrics and accounts for global congruence between locally incongruent trees. The growth of the neighborhoodâ€¦ (More)

We use an agent-based modeling software, NetLogo, to simulate fabric drape by applying a modified mass spring system. This model provides an application of harmonic motion to textiles and fashion,â€¦ (More)

Phylogenetic inference-the derivation of a hypothesis for the common evolutionary history of a group of speciesis an active area of research at the intersection of biology, computer science,â€¦ (More)

Given a group-based Markov model on a tree, one can compute the vertex representation of a polytope which describes the associated toric variety. The half-space representation, however, is not easilyâ€¦ (More)

- Ruth Davidson, MaLyn Lawhorn, Joseph Rusinko, Noah Weber
- IEEE/ACM transactions on computational biologyâ€¦
- 2016

Quartet trees displayed by larger phylogenetic trees have long been used as inputs for species tree and supertree reconstruction. Computational constraints prevent the use of all displayed quartetsâ€¦ (More)

â€” Recently, much attention has been given to understanding recombination events along a chromosome in a variety of field. For instance, many population genetics problems are limited by the inaccuracyâ€¦ (More)

- Emili Moan, Joseph Rusinko
- 2014

We apply classical quartet techniques to the problem of phylogenetic decisiveness and find a value k such that all collections of at least k quartets are decisive. Moreover, we prove that this boundâ€¦ (More)

- Marie Mauhar, Joseph Rusinko, Zoe Vernon
- SIAM J. Discrete Math.
- 2017

Given a group-based Markov model on a tree, one can compute the vertex representation of a polytope describing a toric variety associated with the algebraic statistical model. In the cases of Z2 andâ€¦ (More)

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