Large-scale genome projects generate an unprecedented number of protein sequences, most of them are experimentally uncharacterized. Predicting the 3D structures of sequences provides important clues as to their functions. We constructed the Genomes TO Protein structures and functions (GTOP) database, containing protein fold predictions of a huge number of… (More)
This paper describes a Semantic MediaWiki, a MediaWiki extended to include the ideas of Semantic Web. The proposed Semantic MediaWiki works as an integrated system for content management and metadata management.
For the development of technologies for Semantic Web, machine-understandable metadata such as RDF is essential. Constructing RDF triples in a Wiki environment can be done by enabling the writing of labeled links. The labeled link represents the RDF property that links the RDF subject with its object. In a Semantic Wiki environment, users can write and edit… (More)