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Many software tools have been developed for the automated identification of peptides from tandem mass spectra. The accuracy and sensitivity of the identification software via database search are critical for successful proteomics experiments. A new database search tool, PEAKS DB, has been developed by incorporating the de novo sequencing results into the(More)
Time Warp is known for its ability to maximize the exploitation of the parallelism inherent in a simulation. However, this potential has been undermined by the cost of processing causality violations. Minimizing this cost has been one of the most challenging issues facing Time Warp. In this paper, we present <i>dependence list cancellation</i>, a direct(More)
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