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RNA sequencing reveals the complex regulatory network in the maize kernel.
RNA sequencing can simultaneously identify exonic polymorphisms and quantitate gene expression. Here we report RNA sequencing of developing maize kernels from 368 inbred lines producing 25.8 billionExpand
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PRINTR: Prediction of RNA binding sites in proteins using SVM and profiles
Summary.Protein–RNA interactions play a key role in a number of biological processes such as protein synthesis, mRNA processing, assembly and function of ribosomes and eukaryotic spliceosomes. AExpand
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Transcriptome Sequencing and Genome-wide Association Analyses Reveal Lysosomal Function and Actin Cytoskeleton Remodeling in Schizophrenia and Bipolar Disorder
Schizophrenia (SCZ) and bipolar disorder (BPD) are severe mental disorders with high heritability. Clinicians have long noticed the similarities of clinic symptoms between these disorders. In recentExpand
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Deep Sequencing of HIV-Infected Cells: Insights into Nascent Transcription and Host-Directed Therapy
ABSTRACT Polyadenylated mature mRNAs are the focus of standard transcriptome analyses. However, the profiling of nascent transcripts, which often include nonpolyadenylated RNAs, can unveil novelExpand
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Population genomics of finless porpoises reveal an incipient cetacean species adapted to freshwater
Cetaceans (whales, dolphins, and porpoises) are a group of mammals adapted to various aquatic habitats, from oceans to freshwater rivers. We report the sequencing, de novo assembly and analysis of aExpand
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A mouse protein interactome through combined literature mining with multiple sources of interaction evidence
Protein–protein interactions (PPIs) play crucial roles in a number of biological processes. Recently, protein interaction networks (PINs) for several model organisms and humans have been generated,Expand
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An association analysis between psychophysical characteristics and genome-wide gene expression changes in human adaptation to the extreme climate at the Antarctic Dome Argus
Genome-wide gene expression measurements have enabled comprehensive studies that integrate the changes of gene expression and phenotypic information to uncover their novel associations. Here weExpand
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Draft Genome Sequence of Diplodia seriata F98.1, a Fungal Species Involved in Grapevine Trunk Diseases
ABSTRACT The ascomycete Diplodia seriata is a causal agent of grapevine trunk diseases. Here, we present the draft genome sequence of D. seriata isolate F98.1 (37.27 Mb, 512 contigs, 112 scaffolds,Expand
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The Exploration of Mammalian Mitochondrial Genes through Integrating Multiple Lines of Genome-Wide Biological Evidence
Mitochondria are a vital organelle of eukaryotic cells. Many diseases are caused by the mitochondrial gene mutation , therefore, there is an urgent requirement to explore the proteins ofExpand