• Publications
  • Influence
Using FlyAtlas to identify better Drosophila melanogaster models of human disease
FlyAtlas, a new online resource, provides the most comprehensive view yet of expression in multiple tissues of Drosophila melanogaster. Meta-analysis of the data shows that a significant fraction ofExpand
  • 1,357
  • 203
WEGO: a web tool for plotting GO annotations
TLDR
WEGO (Web Gene Ontology Annotation Plot) is a simple but useful tool for visualizing, comparing and plotting GO annotation results. Expand
  • 2,135
  • 124
  • PDF
Architecture of the human regulatory network derived from ENCODE data
Transcription factors bind in a combinatorial fashion to specify the on-and-off states of genes; the ensemble of these binding events forms a regulatory network, constituting the wiring diagram for aExpand
  • 1,247
  • 69
  • PDF
Regulation of OsSPL14 by OsmiR156 defines ideal plant architecture in rice
Increasing crop yield is a major challenge for modern agriculture. The development of new plant types, which is known as ideal plant architecture (IPA), has been proposed as a means to enhance riceExpand
  • 725
  • 51
Proteogenomics connects somatic mutations to signaling in breast cancer
Summary Somatic mutations have been extensively characterized in breast cancer, but the effects of these genetic alterations on the proteomic landscape remain poorly understood. We describeExpand
  • 740
  • 44
Proteogenomic characterization of human colon and rectal cancer
Extensive genomic characterization of human cancers presents the problem of inference from genomic abnormalities to cancer phenotypes. To address this problem, we analysed proteomes of colon andExpand
  • 809
  • 42
  • PDF
ICSNPathway: identify candidate causal SNPs and pathways from genome-wide association study by one analytical framework
TLDR
ICSNPathway is developed to identify candidate causal SNPs and their corresponding candidate causal pathways from GWAS by integrating linkage disequilibrium (LD) analysis, functional SNP annotation and PBA. Expand
  • 69
  • 20
  • PDF
SilkDB: a knowledgebase for silkworm biology and genomics
TLDR
The Silkworm Knowledgebase (SilkDB) is a web-based repository for the curation, integration and study of silkworm genetic and genomic data. Expand
  • 166
  • 18
  • PDF
i-GSEA4GWAS: a web server for identification of pathways/gene sets associated with traits by applying an improved gene set enrichment analysis to genome-wide association study
TLDR
We developed the i-GSEA4GWAS (improved GSEA for GWAS) web server to provide researchers an open platform to analyze GWAS data. Expand
  • 172
  • 16
  • PDF
Flowering Time Quantitative Trait Loci Analysis of Oilseed Brassica in Multiple Environments and Genomewide Alignment with Arabidopsis
Most agronomical traits exhibit quantitative variation, which is controlled by multiple genes and are environmentally dependent. To study the genetic variation of flowering time in Brassica napus, aExpand
  • 178
  • 15
  • PDF