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Simian Virus 40 Depends on ER Protein Folding and Quality Control Factors for Entry into Host Cells
Cell entry of Simian Virus 40 (SV40) involves caveolar/lipid raft-mediated endocytosis, vesicular transport to the endoplasmic reticulum (ER), translocation into the cytosol, and import into theExpand
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The quantitative proteome of a human cell line
The generation of mathematical models of biological processes, the simulation of these processes under different conditions, and the comparison and integration of multiple data sets are explicitExpand
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OpenSWATH enables automated, targeted analysis of data-independent acquisition MS data
Hannes L. Rost, 2, ∗ George Rosenberger, 2, ∗ Pedro Navarro, Ludovic Gillet, Sasa M. Miladinovic, 3 Olga T. Schubert, 2 Witold Wolski, Ben C. Collins, Johan Malmstrom, Lars Malmstrom, and RuediExpand
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A High-Confidence Human Plasma Proteome Reference Set with Estimated Concentrations in PeptideAtlas*
Human blood plasma can be obtained relatively noninvasively and contains proteins from most, if not all, tissues of the body. Therefore, an extensive, quantitative catalog of plasma proteins is anExpand
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Proteome-wide cellular protein concentrations of the human pathogen Leptospira interrogans
Mass-spectrometry-based methods for relative proteome quantification have broadly affected life science research. However, important research directions, particularly those involving mathematicalExpand
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Rtt101 and Mms1 in budding yeast form a CUL4DDB1‐like ubiquitin ligase that promotes replication through damaged DNA
In budding yeast the cullin Rtt101 promotes replication fork progression through natural pause sites and areas of DNA damage, but its relevant subunits and molecular mechanism remain poorlyExpand
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Targeted Quantitative Analysis of Streptococcus pyogenes Virulence Factors by Multiple Reaction Monitoring*S
In many studies, particularly in the field of systems biology, it is essential that identical protein sets are precisely quantified in multiple samples such as those representing differentiallyExpand
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Visual proteomics of the human pathogen Leptospira interrogans
Systems biology conceptualizes biological systems as dynamic networks of interacting elements, whereby functionally important properties are thought to emerge from the structure of such networks.Expand
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Proteins of novel lactic acid bacteria from Apis mellifera mellifera: an insight into the production of known extra-cellular proteins during microbial stress
BackgroundLactic acid bacteria (LAB) has been considered a beneficial bacterial group, found as part of the microbiota of diverse hosts, including humans and various animals. However, the mechanismsExpand
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Comparative Functional Analysis of the Caenorhabditis elegans and Drosophila melanogaster Proteomes
The nematode Caenorhabditis elegans is a popular model system in genetics, not least because a majority of human disease genes are conserved in C. elegans. To generate a comprehensive inventory ofExpand
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