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Population structure of Sclerotinia sclerotiorum in crop and wild hosts in the UK
Sclerotinia sclerotiorum is an important pathogen of many crop plants which also infects wild hosts. The population structure of this fungus was studied for different crop plants and Ranunculus acrisExpand
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Archaeogenomic evidence of punctuated genome evolution in Gossypium.
Transposable elements (TEs) are drivers of evolution resulting in episodic surges of genetic innovation and genomic reorganization (Oliver KR, Greene WK. 2009. TEs: powerful facilitators ofExpand
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The Evolution of Fungicide Resistance Resulting from Combinations of Foliar-Acting Systemic Seed Treatments and Foliar-Applied Fungicides: A Modeling Analysis
For the treatment of foliar diseases of cereals, fungicides may be applied as foliar sprays or systemic seed treatments which are translocated to leaves. Little research has been done to assess theExpand
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Using archaeogenomic and computational approaches to unravel the history of local adaptation in crops
Our understanding of the evolution of domestication has changed radically in the past 10 years, from a relatively simplistic rapid origin scenario to a protracted complex process in which plantsExpand
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Archaeogenomic insights into the adaptation of plants to the human environment: pushing plant-hominin co-evolution back to the Pliocene.
The colonization of the human environment by plants, and the consequent evolution of domesticated forms is increasingly being viewed as a co-evolutionary plant-human process that occurred over a longExpand
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MCMC-ODPR: Primer design optimization using Markov Chain Monte Carlo sampling
TLDR
We have implemented Metropolis-Hastings Markov Chain Monte Carlo Optimized Degenerate Primer Reuse to design degenerate primers that could be designed around SNPs, thus find the fewest necessary primers and the lowest cost whilst maintaining an acceptable coverage. Expand
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Surprisingly Low Limits of Selection in Plant Domestication
Current debate concerns the pace at which domesticated plants emerged from cultivated wild populations and how many genes were involved. Using an individual-based model, based on the assumptions ofExpand
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Systems Modeling at Multiple Levels of Regulation: Linking Systems and Genetic Networks to Spatially Explicit Plant Populations
Selection and adaptation of individuals to their underlying environments are highly dynamical processes, encompassing interactions between the individual and its seasonally changing environment,Expand
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The limits of selection under plant domestication
Plant domestication involved a process of selection through human agency of a series of traits collectively termed the domestication syndrome. Current debate concerns the pace at which domesticatedExpand
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The Limits of Mean-Field Heterozygosity Estimates under Spatial Extension in Simulated Plant Populations
Computational models of evolutionary processes are increasingly required to incorporate multiple and diverse sources of data. A popular feature to include in population genetics models is spatialExpand
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