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MaxQuant enables high peptide identification rates, individualized p.p.b.-range mass accuracies and proteome-wide protein quantification
TLDR
Andromeda: a peptide search engine integrated into the MaxQuant environment.
- J. Cox, Nadin Neuhauser, Annette Michalski, R. Scheltema, J. Olsen, M. Mann
- BiologyJournal of proteome research
- 22 February 2011
TLDR
The Perseus computational platform for comprehensive analysis of (prote)omics data
- S. Tyanova, Tikira Temu, J. Cox
- Computer ScienceNature Methods
- 1 September 2016
TLDR
Accurate Proteome-wide Label-free Quantification by Delayed Normalization and Maximal Peptide Ratio Extraction, Termed MaxLFQ *
- J. Cox, Marco Y. Hein, Christian A. Luber, I. Paron, Nagarjuna Nagaraj, M. Mann
- BiologyMolecular & Cellular Proteomics
- 17 June 2014
TLDR
The PRIDE database and related tools and resources in 2019: improving support for quantification data
- Yasset Pérez-Riverol, A. Csordas, J. Vizcaíno
- Computer ScienceNucleic Acids Res.
- 5 November 2018
TLDR
A practical guide to the MaxQuant computational platform for SILAC-based quantitative proteomics
TLDR
Quantitative Phosphoproteomics Reveals Widespread Full Phosphorylation Site Occupancy During Mitosis
- J. Olsen, M. Vermeulen, M. Mann
- BiologyScience Signaling
- 12 January 2010
TLDR
A Human Interactome in Three Quantitative Dimensions Organized by Stoichiometries and Abundances
- Marco Y. Hein, N. Hubner, M. Mann
- BiologyCell
- 22 October 2015
1D and 2D annotation enrichment: a statistical method integrating quantitative proteomics with complementary high-throughput data
TLDR
System-Wide Changes to SUMO Modifications in Response to Heat Shock
- F. Golebiowski, I. Matic, R. Hay
- BiologyScience Signaling
- 26 May 2009
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