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- P Reimann, C Van den Broeck, H Linke, P Hänggi, J M Rubi, A Pérez-Madrid
- Physical review. E, Statistical, nonlinear, and…
- 2002

An exact analytical expression for the effective diffusion coefficient of an overdamped Brownian particle in a tilted periodic potential is derived for arbitrary potentials and arbitrary strengths of the thermal noise. Near the critical tilt (threshold of deterministic running solutions) a scaling behavior for weak thermal noise is revealed and various… (More)

- P Reimann, C Van den Broeck, H Linke, P Hänggi, J M Rubi, A Pérez-Madrid
- Physical review letters
- 2001

The effective diffusion coefficient for the overdamped Brownian motion in a tilted periodic potential is calculated in closed analytical form. Universality classes and scaling properties for weak thermal noise are identified near the threshold tilt where deterministic running solutions set in. In this regime the diffusion may be greatly enhanced, as… (More)

We show that transport in the presence of entropic barriers exhibits peculiar characteristics which makes it distinctly different from that occurring through energy barriers. The constrained dynamics yields a scaling regime for the particle current and the diffusion coefficient in terms of the ratio between the work done to the particles and available… (More)

We use the mesoscopic nonequilibrium thermodynamics theory to derive the general kinetic equation of a system in the presence of potential barriers. The result is applied to a description of the evolution of systems whose dynamics is influenced by entropic barriers. We analyze in detail the case of diffusion in a domain of irregular geometry in which the… (More)

- P S Burada, G Schmid, D Reguera, J M Rubí, P Hänggi
- Physical review. E, Statistical, nonlinear, and…
- 2007

We study biased, diffusive transport of Brownian particles through narrow, spatially periodic structures in which the motion is constrained in lateral directions. The problem is analyzed under the perspective of the Fick-Jacobs equation, which accounts for the effect of the lateral confinement by introducing an entropic barrier in a one-dimensional… (More)

- P S Burada, G Schmid, D Reguera, M H Vainstein, J M Rubi, P Hänggi
- Physical review letters
- 2008

We present a novel scheme for the appearance of stochastic resonance when the dynamics of a Brownian particle takes place in a confined medium. The presence of uneven boundaries, giving rise to an entropic contribution to the potential, may upon application of a periodic driving force result in an increase of the spectral amplification at an optimum value… (More)

- M H Vainstein, J M Rubí
- Physical review. E, Statistical, nonlinear, and…
- 2007

We show that in driven systems the Gaussian nature of the fluctuating force and time reversibility are equivalent properties. This result together with the potential condition of the external force drastically restricts the form of the probability distribution function, which can be shown to satisfy time-independent relations. We have corroborated this… (More)

- Leonor Saiz, J Miguel Rubi, Jose M G Vilar
- Proceedings of the National Academy of Sciences…
- 2005

The free energy of looping DNA by proteins and protein complexes determines to what extent distal DNA sites can affect each other. We inferred its in vivo value through a combined computational-experimental approach for different lengths of the loop and found that, in addition to the intrinsic periodicity of the DNA double helix, the free energy has an… (More)

- Anders Lervik, Fernando Bresme, Signe Kjelstrup, J Miguel Rubí
- Biophysical journal
- 2012

Experimental studies have shown that the activity of the reconstituted molecular pump Ca(2+)-ATPase strongly depends on the thickness of the supporting bilayer. It is thus expected that the bilayer structure will have an impact on the thermodynamic efficiency of this nanomachine. Here, we introduce a nonequilibrium-thermodynamics theoretical approach to… (More)

- D Reguera, J M Rubí, J M G Vilar
- The journal of physical chemistry. B
- 2005

Concepts of everyday use such as energy, heat, and temperature have acquired a precise meaning after the development of thermodynamics. Thermodynamics provides the basis for understanding how heat and work are related and the general rules that the macroscopic properties of systems at equilibrium follow. Outside equilibrium and away from macroscopic… (More)