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Optimal implementations of UPGMA and other common clustering algorithms

• Ilan Gronau, Shlomo Moran
• Inf. Process. Lett.
• 2007

In this work we consider hierarchical clustering algorithms, such as UPGMA, which follow the closest-pair joining scheme. We study optimal O(n)-time implementations of such algorithms which use a… (More)

Whole-genome sequence analysis shows that two endemic species of North American wolf are admixtures of the coyote and gray wolf

• Bridgett M. vonHoldt, James A. Cahill, +6 authors Robert K. Wayne
• Science Advances
• 2016

Protection of populations comprising admixed genomes is a challenge under the Endangered Species Act (ESA), which is regarded as the most powerful species protection legislation ever passed in the… (More)

Distinguishing noise from signal in patterns of genomic divergence in a highly polymorphic avian radiation.

• Leonardo Campagna, Ilan Gronau, Luís Fábio Silveira, Adam Siepel, Irby John Lovette
• Molecular ecology
• 2015

Recently diverged taxa provide the opportunity to search for the genetic basis of the phenotypes that distinguish them. Genomic scans aim to identify loci that are diverged with respect to an… (More)

Recursive construction of perfect DNA molecules from imperfect oligonucleotides

• Gregory Linshiz, Tuval Ben Yehezkel, +4 authors Ehud Shapiro
• Molecular systems biology
• 2008

Making faultless complex objects from potentially faulty building blocks is a fundamental challenge in computer engineering, nanotechnology and synthetic biology. Here, we show for the first time how… (More)

Worldwide patterns of genomic variation and admixture in gray wolves.

• Zhenxin Fan, Pedro Silva, +16 authors Robert K. Wayne
• Genome research
• 2016

The gray wolf (Canis lupus) is a widely distributed top predator and ancestor of the domestic dog. To address questions about wolf relationships to each other and dogs, we assembled and analyzed a… (More)

Fast and reliable reconstruction of phylogenetic trees with indistinguishable edges

• Ilan Gronau, Shlomo Moran, Sagi Snir
• Random Struct. Algorithms
• 2012

Phylogenetic reconstruction methods attempt to reconstruct a tree describing the evolution of a given set of species using sequences of characters (e.g. DNA) extracted from these species as input. A… (More)

Response to Hohenlohe et al.

• Bridgett M. vonHoldt, James A. Cahill, Ilan Gronau, Beth Shapiro, Jeffrey D. Wall, Robert K. Wayne
• Science Advances
• 2017

A response to Hohenlohe et al.

Adaptive Distance Measures for Resolving K2P Quartets: Metric Separation versus Stochastic Noise

• Ilan Gronau, Shlomo Moran, Irad Yavneh
• Journal of Computational Biology
• 2010

Distance-based phylogenetic reconstruction methods use the evolutionary distances between species in order to reconstruct the tree spanning them. The evolutionary distance between two species, which… (More)

On the hardness of inferring phylogenies from triplet-dissimilarities

• Ilan Gronau, Shlomo Moran
• Theor. Comput. Sci.
• 2007

This work considers the problem of reconstructing a phylogenetic tree from triplet dissimilarities, which are dissimilarities defined over taxontriplets. Triplet dissimilarities are possibly the… (More)

Recursive construction and error correction of DNA molecules and libraries from synthetic and natural DNA.

• Tuval Ben Yehezkel, Gregory Linshiz, +4 authors Ehud Shapiro
• Methods in enzymology
• 2011

Making error-free, custom DNA assemblies from potentially faulty building blocks is a fundamental challenge in synthetic biology. Here, we show how recursion can be used to address this challenge… (More)

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