Honghuang Lin

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Chronic low-grade inflammation reflects a subclinical immune response implicated in the pathogenesis of complex diseases. Identifying genetic loci where DNA methylation is associated with chronic low-grade inflammation may reveal novel pathways or therapeutic targets for inflammation. We performed a meta-analysis of epigenome-wide association studies (EWAS)(More)
Protein sequence contains clues to its function. Functional prediction from sequence presents a challenge particularly for proteins that have low or no sequence similarity to proteins of known function. Recently, machine learning methods have been explored for predicting functional class of proteins from sequence-derived properties independent of sequence(More)
BACKGROUND Although growing evidence from trials and population-based studies has supported a protective role for flavonoids in relation to risk of certain chronic diseases, the underlying mechanisms remain unclear. Several previous studies focused on individual inflammatory biomarkers, but because of the limited specificity of any individual marker, an(More)
The emergence of digitally-intensive analog circuits introduces new challenges to formal verification due to increased digital design content, and non-ideal digital effects such as finite resolution, round-off error and overflow. We propose a machine learning approach to convert digital blocks to conservative analog approximations via the use of <i>kernel(More)
Leveraging machine learning has been proven as a promising avenue for addressing many practical circuit design and verification challenges. We demonstrate a novel active learning guided machine learning approach for characterizing circuit performance. When employed under the context of support vector machines, the proposed probabilistically weighted active(More)
Reduced glomerular filtration rate defines chronic kidney disease and is associated with cardiovascular and all-cause mortality. We conducted a meta-analysis of genome-wide association studies for estimated glomerular filtration rate (eGFR), combining data across 133,413 individuals with replication in up to 42,166 individuals. We identify 24 new and(More)
Drowsiness presents major safety concerns for tasks that require long periods of focus and alertness. While there is a body of work on drowsiness detection using EEG signals in neuroscience and engineering, there exist unanswered questions pertaining to the best mechanisms to use for detecting drowsiness. Targeting a range of practical safety-awareness(More)
UNLABELLED Bioinformatics involves the collection, organization and analysis of large amounts of biological data, using networks of computers and databases. Developing countries in the Asia-Pacific region are just moving into this new field of information-based biotechnology. However, the computational infrastructure and network bandwidths available in(More)
Atrial fibrillation (AF) is a morbid and heritable arrhythmia. Over 35 genes have been reported to underlie AF, most of which were described in small candidate gene association studies. Replication remains lacking for most, and therefore the contribution of coding variation to AF susceptibility remains poorly understood. We examined whole exome sequencing(More)