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Comparison of Affymetrix GeneChip expression measures
TLDR
MOTIVATION In the Affymetrix GeneChip system, preprocessing occurs before one obtains expression level measurements. Expand
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The Gene Expression Barcode: leveraging public data repositories to begin cataloging the human and murine transcriptomes
TLDR
The Gene Expression Barcode is the first database to provide reliable absolute measures of expression for most annotated genes for 131 human and 89 mouse tissue types, including diseased tissue. Expand
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A benchmark for Affymetrix GeneChip expression measures
TLDR
We have developed a graphical tool for the evaluation and comparison of expression measures on the Affymetrix GeneChip platform (Lockhart et al., 1996). Expand
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Redefining CpG islands using hidden Markov models.
The DNA of most vertebrates is depleted in CpG dinucleotide: a C followed by a G in the 5' to 3' direction. CpGs are the target for DNA methylation, a chemical modification of cytosine (C) heritableExpand
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The Gene Expression Barcode 3.0: improved data processing and mining tools
TLDR
The Gene Expression Barcode project, http://barcode.org, seeks to determine the genes expressed for every tissue and cell type in humans and mice. Expand
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Peak intraocular pressure and glaucomatous progression in primary open-angle glaucoma.
PURPOSE To evaluate the effect of 24-h peak intraocular pressure (IOP) on the progression of primary open-angle glaucoma (POAG) and the 24 h time points that best predict peak pressure. METHODS AExpand
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Patients' perceptions of the value of current vision: assessment of preference values among patients with subfoveal choroidal neovascularization--The Submacular Surgery Trials Vision Preference Value
OBJECTIVE To improve understanding and awareness of the impact of subfoveal choroidal neovascularization (CNV) on health-related quality of life, we sought to measure the preference value thatExpand
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fRMA ST: frozen robust multiarray analysis for Affymetrix Exon and Gene ST arrays
TLDR
Frozen robust multiarray analysis is a single-array preprocessing algorithm that retains the advantages of multiarray algorithms and removes certain batch effects by downweighting probes that have high between-batch residual variance. Expand
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INTERADAPT -- AN INTERACTIVE TOOL FOR DESIGNING AND EVALUATING RANDOMIZED TRIALS WITH ADAPTIVE ENROLLMENT CRITERIA
The interAdapt R package is designed to be used by statisticians and clinical investigators to plan randomized trials. It can be used to determine if certain adaptive designs offer tangible benefitsExpand
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Gene expression Comparison of Affymetrix GeneChip expression measures
Motivation: In the Affymetrix GeneChip system, preprocessing occurs before one obtains expression level measurements. Because the number of competing preprocessing methods was large and growing weExpand