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Improvement of the Oryza sativa Nipponbare reference genome using next generation sequence and optical map data
BackgroundRice research has been enabled by access to the high quality reference genome sequence generated in 2005 by the International Rice Genome Sequencing Project (IRGSP). To further facilitate… Expand
EIN4 and ERS2 Are Members of the Putative Ethylene Receptor Gene Family in Arabidopsis
The Arabidopsis ethylene receptor gene ETR1 and two related genes, ERS1 and ETR2, were identified previously. These three genes encode proteins homologous to the two-component regulators that are… Expand
ETR2 is an ETR1-like gene involved in ethylene signaling in Arabidopsis.
- H. Sakai, J. Hua, +4 authors E. Meyerowitz
- Biology, Medicine
- Proceedings of the National Academy of Sciences…
- 12 May 1998
The plant hormone ethylene regulates a variety of processes of growth and development. To identify components in the ethylene signal transduction pathway, we screened for ethylene-insensitive mutants… Expand
Rice Annotation Project Database (RAP-DB): An Integrative and Interactive Database for Rice Genomics
- H. Sakai, S. S. Lee, +14 authors Takeshi Itoh
- Medicine, Computer Science
- Plant & cell physiology
- 7 January 2013
The Rice Annotation Project Database (RAP-DB, http://rapdb.dna.affrc.go.jp/) has been providing a comprehensive set of gene annotations for the genome sequence of rice, Oryza sativa (japonica group) cv. Expand
Unlocking the Barley Genome by Chromosomal and Comparative Genomics[W][OA]
Survey sequence and array hybridization data from flow-sorted barley chromosomes were integrated using a comparative genomics model to define an ordered gene map of the barley genome that contains… Expand
The Rice Annotation Project Database (RAP-DB): hub for Oryza sativa ssp. japonica genome information
- H. Ohyanagi, T. Tanaka, +11 authors T. Sasaki
- Computer Science, Biology
- Nucleic Acids Res.
- 28 December 2005
We present the Rice Annotation Project Database (RAP-DB), which has been developed to provide access to the annotation data and is a hub for rice genomics. Expand
Rockfall activity from an alpine cliff during thawing periods
Abstract Rockfall activity during thawing periods was investigated by collecting rockfall debris fallen on the snow-covered talus slope in a cirque in the Japanese Alps. Near-surface rock temperature… Expand
The Rice Annotation Project Database (RAP-DB): 2008 update*
- T. Tanaka, B. Antonio, +88 authors M. Echeverria
- Biology, Computer Science
- Nucleic Acids Res.
- 17 November 2007
The Rice Annotation Project Database (RAP-DB) was created to provide the genome sequence assembly of the International Rice Genome Sequencing Project (IRGSP), manually curated annotation of the sequence, and other genomics information that could be useful for comprehensive understanding of the rice biology. Expand
Curated genome annotation of Oryza sativa ssp. japonica and comparative genome analysis with Arabidopsis thaliana.
We present here the annotation of the complete genome of rice Oryza sativa L. ssp. japonica cultivar Nipponbare. All functional annotations for proteins and non-protein-coding RNA (npRNA) candidates… Expand
MiniX-STR multiplex system population study in Japan and application to degraded DNA analysis
- H. Asamura, H. Sakai, K. Kobayashi, M. Ota, H. Fukushima
- Medicine, Biology
- International Journal of Legal Medicine
- 11 February 2006
We sought to evaluate a more effective system for analyzing X-chromosomal short tandem repeats (X-STRs) in highly degraded DNA. To generate smaller amplicon lengths, we designed new polymerase chain… Expand