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Grapevine leafroll-associated virus 3
Grapevine leafroll disease (GLD) is one of the most important grapevine viral diseases affecting grapevines worldwide. The impact on vine health, crop yield, and quality is difficult to assess due toExpand
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Deep sequencing analysis of viruses infecting grapevines: Virome of a vineyard.
Double stranded RNA, isolated from 44 pooled randomly selected vines from a diseased South African vineyard, has been used in a deep sequencing analysis to build a census of the viral population. TheExpand
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Three genetic grapevine leafroll-associated virus 3 variants identified from South African vineyards show high variability in their 5′UTR
Three genetic variants of grapevine leafroll-associated virus 3 (GLRaV-3) were identified in vineyards of the Western Cape, South Africa. The GLRaV-3 variants were identified by single-strandExpand
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Complete nucleotide sequence of a South African isolate of grapevine leafroll-associated virus 3 reveals a 5′UTR of 737 nucleotides
Grapevine leafroll-associated virus 3 (GLRaV-3) is the type species of the genus Ampelovirus (family Closteroviridae) [1]. It is an economically important virus that is known to only infect VitisExpand
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Complete nucleotide sequence of a new strain of grapevine leafroll-associated virus 3 in South Africa
The complete genome sequences of two newly identified genetic variants of grapevine leafroll-associated virus 3 (GLRaV-3) are described. Two isolates, GH11 (18671 nt) and GH30 (18576 nt) wereExpand
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Complete Genome of a Novel Endornavirus Assembled from Next-Generation Sequence Data
ABSTRACT Endornaviruses have large double-stranded RNA (dsRNA) genomes that carry a single open reading frame (ORF). Here we report the complete genome of a novel endornavirus, assembled fromExpand
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Next-generation sequencing for virus detection: covering all the bases
BackgroundThe use of next-generation sequencing has become an established method for virus detection. Efficient study design for accurate detection relies on the optimal amount of data representing aExpand
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Targeted virus detection in next-generation sequencing data using an automated e-probe based approach.
The use of next-generation sequencing for plant virus detection is rapidly expanding, necessitating the development of bioinformatic pipelines to support analysis of these large datasets. PipelinesExpand
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Extending the sRNAome of Apple by Next-Generation Sequencing
The global importance of apple as a fruit crop necessitates investigations into molecular aspects of the processes that influence fruit quality and yield, including plant development, fruit ripeningExpand
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Next-generation sequencing of cervical DNA detects human papillomavirus types not detected by commercial kits
BackgroundHuman papillomavirus (HPV) is the aetiological agent for cervical cancer and genital warts. Concurrent HPV and HIV infection in the South African population is high. HIV positive (+) womenExpand
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