H. Hermjakob
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- Publications
- Influence
Initial sequencing and analysis of the human genome.
The human genome holds an extraordinary trove of information about human development, physiology, medicine and evolution. Here we report the results of an international collaboration to produce and… Expand
The Reactome pathway knowledgebase
- D. Croft, A. Fabregat, +20 authors P. D'Eustachio
- Computer Science, Medicine
- Nucleic Acids Res.
- 15 November 2013
Reactome (http://www.reactome.org) is a manually curated open-source open-data resource of human pathways and reactions. The current version 46 describes 7088 human proteins (34% of the predicted… Expand
ProteomeXchange provides globally co-ordinated proteomics data submission and dissemination
- J. Vizcaíno, E. Deutsch, +22 authors H. Hermjakob
- Medicine, Biology
- Nature Biotechnology
- 5 February 2014
5. Tools available and ways to submit data to PX ............................................................. 11 5.1. MS/MS data submissions to PRIDE… Expand
Reactome: a database of reactions, pathways and biological processes
- David Croft, Gavin O'Kelly, +19 authors L. Stein
- Biology, Computer Science
- Nucleic Acids Res.
- 8 November 2010
Reactome (http://www.reactome.org) is a collaboration among groups at the Ontario Institute for Cancer Research, Cold Spring Harbor Laboratory, New York University School of Medicine and The European… Expand
2016 update of the PRIDE database and its related tools
- J. Vizcaíno, A. Csordas, +10 authors H. Hermjakob
- Biology, Medicine
- Nucleic Acids Res.
- 4 January 2016
The PRoteomics IDEntifications (PRIDE) database is one of the world-leading data repositories of mass spectrometry (MS)-based proteomics data. Since the beginning of 2014, PRIDE Archive… Expand
Databases on transcriptional regulation: TRANSFAC, TRRD and COMPEL
- T. Heinemeyer, E. Wingender, +9 authors N. Kolchanov
- Computer Science, Medicine
- Nucleic Acids Res.
- 1998
TRANSFAC, TRRD (Transcription Regulatory Region Database) and COMPEL are databases which store information about transcriptional regulation in eukaryotic cells. The three databases provide distinct… Expand
The MIntAct project—IntAct as a common curation platform for 11 molecular interaction databases
- S. Orchard, Mais G. Ammari, +32 authors H. Hermjakob
- Computer Science, Medicine
- Nucleic Acids Res.
- 13 November 2013
IntAct (freely available at http://www.ebi.ac.uk/intact) is an open-source, open data molecular interaction database populated by data either curated from the literature or from direct data… Expand
Reactome knowledgebase of human biological pathways and processes
- Lisa Matthews, G. Gopinath, +17 authors P. D'Eustachio
- Computer Science, Medicine
- Nucleic Acids Res.
- 3 November 2008
Reactome (http://www.reactome.org) is an expert-authored, peer-reviewed knowledgebase of human reactions and pathways that functions as a data mining resource and electronic textbook. Its current… Expand
The InterPro database, an integrated documentation resource for protein families, domains and functional sites
- R. Apweiler, T. Attwood, +25 authors E. Zdobnov
- Medicine, Computer Science
- Nucleic Acids Res.
- 2001
Signature databases are vital tools for identifying distant relationships in novel sequences and hence for inferring protein function. InterPro is an integrated documentation resource for protein… Expand
IntAct: an open source molecular interaction database
- H. Hermjakob, L. Montecchi-Palazzi, +13 authors R. Apweiler
- Biology, Medicine
- Nucleic Acids Res.
- 2004
IntAct provides an open source database and toolkit for the storage, presentation and analysis of protein interactions. The web interface provides both textual and graphical representations of… Expand