• Publications
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The Tree of Life and a New Classification of Bony Fishes
The tree of life of fishes is in a state of flux because we still lack a comprehensive phylogeny that includes all major groups. The situation is most critical for a large clade of spiny-finnedExpand
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A practical approach to phylogenomics: the phylogeny of ray-finned fish (Actinopterygii) as a case study
BackgroundMolecular systematics occupies one of the central stages in biology in the genomic era, ushered in by unprecedented progress in DNA technology. The inference of organismal phylogeny is nowExpand
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Vector NTI, a balanced all-in-one sequence analysis suite
TLDR
Vector NTI is a well-balanced desktop application integrated for molecular sequence analysis and biological data management. Expand
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Optimal data partitioning and a test case for ray-finned fishes (Actinopterygii) based on ten nuclear loci.
Data partitioning, the combined phylogenetic analysis of homogeneous blocks of data, is a common strategy used to accommodate heterogeneities in complex multilocus data sets. Variation inExpand
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Complete mitochondrial genome of the grass carp (Ctenopharyngodon idella, Teleostei): insight into its phylogenic position within Cyprinidae.
Genome comparison has shed light on many fields of both basic and applied research, including the study of species phylogeny. Grass carp (Ctenopharyngodon idella) belongs to Cyprinidae, the largestExpand
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FluGenome: a web tool for genotyping influenza A virus
TLDR
We have developed a nomenclature to name influenza A genotypes and implemented a web server, FluGenome (http://www.flugenome.org/), for the assignment of lineages. Expand
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Integrating molecular genetics and ecology in studies of adaptive radiation: Whitefish
The magnetron apparatus comprises a magnetron tube and a driving circuit including a transformer having a primary winding, a low voltage secondary winding for energizing the cathode filament of theExpand
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An improved string composition method for sequence comparison
TLDR
We observed two problems existing in the currently used string composition methods and proposed a new robust method for the estimation of evolutionary information of genetic sequences. Expand
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Transcriptome Analysis of Crucian Carp (Carassius auratus), an Important Aquaculture and Hypoxia-Tolerant Species
The crucian carp is an important aquaculture species and a potential model to study genome evolution and physiological adaptation. However, so far the genomics and transcriptomics data available forExpand
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The Hera database and its use in the characterization of endoplasmic reticulum proteins
TLDR
MOTIVATION Information concerning endoplasmic reticulum proteins is widely dispersed and cannot be easily and rapidly processed by the biological community. Expand
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