Greg Slodkowicz

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Blood cells derive from hematopoietic stem cells through stepwise fating events. To characterize gene expression programs driving lineage choice, we sequenced RNA from eight primary human hematopoietic progenitor populations representing the major myeloid commitment stages and the main lymphoid stage. We identified extensive cell type-specific expression(More)
In line with the importance of RNA-seq, the bioinformatics community has produced numerous data analysis tools incorporating methods to correct sample-specific biases. However, few advanced simulation tools exist to enable benchmarking of competing correction methods. We introduce the first framework to reproduce the properties of individual RNA-seq runs(More)
In mammals, DNA methylation profiles vary substantially between tissues. Recent genome-scale studies report that blood displays a highly distinctive methylomic profile from other somatic tissues. In this study, we sought to understand why blood DNA methylation state is so different to the one found in other tissues. We found that whole blood contains(More)
10:30 11:00 Keneth Hoehn University of Oxford Modeling the decay of hotspot motifs in broadly neutralizing antibody lineages 11:00 11:30 Joe O'Reilly University of Bristol The Mk Model for Total Evidence Dating: Fit for Purpose? 11:30 12:00 Jose Barba-Monotya University College London Constraining uncertainty in timescale of angiosperm evolution and the(More)
The poly(A) tail, co-transcriptionally added to most eukaryotic mRNAs, plays an important role in posttranscriptional regulation through modulating mRNA stability and translational efficiency. The length of the poly(A) tail is dynamic, decreasing or increasing in response to various stimuli through the action of enzymatic complexes, and changes in tail(More)
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