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A Ternary Search Trie (TST) is a highly efficient dynamic dictionary structure applicable for strings and textual data. The strings are accessed based on a set of access probabilities and are to be arranged using a TST. We consider the scenario where the probabilities are not known a priori, and is time-invariant. Our aim is to adaptively restructure the… (More)
We describe an average-case O(n2) algorithm to list all reversals on a signed permutation π that, when applied to π, produce a permutation that is closer to the identity. This algorithm is optimal in the sense that, the time it takes to write the list is Ω(n2) in the worst case.
Naturally inspired evolutionary algorithms prove effectiveness when used for solving feature selection and classification problems. Artificial Bee Colony (ABC) is a relatively new swarm intelligence method. In this paper, we propose a new hybrid gene selection method, namely Genetic Bee Colony (GBC) algorithm. The proposed algorithm combines the used of a… (More)
An artificial bee colony (ABC) is a relatively recent swarm intelligence optimization approach. In this paper, we propose the first attempt at applying ABC algorithm in analyzing a microarray gene expression profile. In addition, we propose an innovative feature selection algorithm, minimum redundancy maximum relevance (mRMR), and combine it with an ABC… (More)
In comparative genomics studies, finding a minimum length sequences of reversals, so-called sorting by reversals, has been the topic of a huge literature. Since there are many minimum length sequences, another important topic has been the problem of listing all parsimonious sequences between two genomes, called the All Sorting Sequences by Reversals (ASSR)… (More)
—Cancer is one of the dreadful diseases, which causes a considerable death rate in humans. Cancer is featured by an irregular, unmanageable growth that may demolish and attack neighboring healthy body tissues or somewhere else in the body. Microarray based gene expression profiling has been emerged as an efficient technique for cancer classification, as… (More)