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Comparative Transcriptome Analysis of Three Oil Palm Fruit and Seed Tissues That Differ in Oil Content and Fatty Acid Composition1[C][W][OA]
Tissue-specific transcriptional regulation determines the differences in oil content and fatty acid composition of oil palm fruit and seed tissues. Oil palm (Elaeis guineensis) produces two oils ofExpand
Temperature desynchronizes sugar and organic acid metabolism in ripening grapevine fruits and remodels their transcriptome
BackgroundFruit composition at harvest is strongly dependent on the temperature during the grapevine developmental cycle. This raises serious concerns regarding the sustainability of viticulture andExpand
Transcriptome population genomics reveals severe bottleneck and domestication cost in the African rice (Oryza glaberrima)
The African cultivated rice (Oryza glaberrima) was domesticated in West Africa 3000 years ago. Although less cultivated than the Asian rice (O. sativa), O. glaberrima landraces often displayExpand
SNiPlay3: a web-based application for exploration and large scale analyses of genomic variations
In addition to the previous analyses allowed by the application, SNiPlay3 proposes new modules for GWAS, population stratification, distance tree analysis and visualization of SNP density. Expand
Pervasive hybridizations in the history of wheat relatives
Bread wheat and durum wheat derive from an intricate evolutionary history of three genomes, namely A, B and D, present in both extent diploid and polyploid species. Despite its importance for wheatExpand
A novel high-density grapevine (Vitis vinifera L.) integrated linkage map using GBS in a half-diallel population
Key messageA half-diallel population involving five elite grapevine cultivars was generated and genotyped by GBS, and highly-informative segregation data was used to construct a high-density geneticExpand
A large set of 26 new reference transcriptomes dedicated to comparative population genomics in crops and wild relatives
We produced a unique large data set of reference transcriptomes to obtain new knowledge about the evolution of plant genomes and crop domestication. For this purpose, we validated a RNA‐Seq dataExpand
Domestication rewired gene expression and nucleotide diversity patterns in tomato
Plant domestication has led to considerable phenotypic modifications from wild species to modern varieties. However, although changes in key traits have been well documented, less is known about theExpand
PHIV-RootCell: a supervised image analysis tool for rice root anatomical parameter quantification
We developed the PHIV-RootCell software to quantify anatomical traits of rice roots transverse section images. Combined with an efficient root sample processing method for image acquisition, thisExpand
Evolutionary transcriptomics reveals the origins of olives and the genomic changes associated with their domestication
Summary The olive (Olea europaea L. subsp. europaea) is one of the oldest and most socio‐economically important cultivated perennial crop in the Mediterranean region. Yet, its origins are still underExpand