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On the LambertW function
TLDR
A new discussion of the complex branches of W, an asymptotic expansion valid for all branches, an efficient numerical procedure for evaluating the function to arbitrary precision, and a method for the symbolic integration of expressions containing W are presented.
A new approach to text searching
We introduce a family of simple and fast algorithms for solving the classical string matching problem, string matching with don't care symbols and complement symbols, and multiple patterns. In
Exhaustive matching of the entire protein sequence database.
TLDR
The alignments made possible by the exhaustive matching are the starting point for successful de novo prediction of the folded structures of proteins, for reconstructing sequences of ancient proteins and metabolisms in ancient organisms, and for obtaining new perspectives in structural biochemistry.
Maple V Language Reference Manual
TLDR
This text describes the Maple Symbolic Computation System and the Maple V language and describes the numeric and symbolic expressions that can be used in Maple V, including its 2D and 3D graphics.
A new approach to text searching
We introduce a family of simple and fast algorithms for solving the classical string matching problem, string matching with don't care symbols and complement symbols, and multiple patterns. In
New Indices for Text: Pat Trees and Pat Arrays
The OMA orthology database in 2015: function predictions, better plant support, synteny view and other improvements
TLDR
Six major new developments in OMA are presented: a new web interface; Gene Ontology function predictions as part of the OMA pipeline; better support for plant genomes and in particular homeologs in the wheat genome; a new synteny viewer providing the genomic context of orthologs; statically computed hierarchical orthologous groups subsets downloadable in OrthoXML format.
OMA 2011: orthology inference among 1000 complete genomes
TLDR
Recent developments in terms of species covered; the algorithmic pipeline—in particular regarding the treatment of alternative splicing, and new features of the web (OMA Browser) and programming interface (SOAP API) are described.
ALF—A Simulation Framework for Genome Evolution
TLDR
Artificial Life Framework is introduced, which aims at simulating the entire range of evolutionary forces that act on genomes: nucleotide, codon, or amino acid substitution, indels, GC-content amelioration, gene duplication, gene loss, gene fusion, gene fission, genome rearrangement, lateral gene transfer, or speciation.
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