• Publications
  • Influence
SNiPlay3: a web-based application for exploration and large scale analyses of genomic variations
In addition to the previous analyses allowed by the application, SNiPlay3 proposes new modules for GWAS, population stratification, distance tree analysis and visualization of SNP density. Expand
Virus Genomes from Deep Sea Sediments Expand the Ocean Megavirome and Support Independent Origins of Viral Gigantism
Genomics and evolution of giant viruses are two of the most vigorously developing areas of virus research. Lately, metagenomics has become the main source of new virus genomes. Here we describe aExpand
A large set of 26 new reference transcriptomes dedicated to comparative population genomics in crops and wild relatives
We produced a unique large data set of reference transcriptomes to obtain new knowledge about the evolution of plant genomes and crop domestication. For this purpose, we validated a RNA‐Seq dataExpand
Genome-Wide Prediction Methods in Highly Diverse and Heterozygous Species: Proof-of-Concept through Simulation in Grapevine
Nowadays, genome-wide association studies (GWAS) and genomic selection (GS) methods which use genome-wide marker data for phenotype prediction are of much potential interest in plant breeding.Expand
Genomes from uncultivated prokaryotes: a comparison of metagenome-assembled and single-amplified genomes
BackgroundProkaryotes dominate the biosphere and regulate biogeochemical processes essential to all life. Yet, our knowledge about their biology is for the most part limited to the minority that hasExpand
Near-complete Lokiarchaeota genomes from complex environmental samples using long and short read metagenomic analyses
Asgard archaea is a recently proposed superphylum currently comprised of five recognised phyla: Lokiarchaeota, Thorarchaeota, Odinarchaeota, Heimdallarchaeota and Helarchaeota. Members of this groupExpand
Evolutionary forces affecting synonymous variations in plant genomes
Base composition is highly variable among and within plant genomes, especially at third codon positions, ranging from GC-poor and homogeneous species to GC-rich and highly heterogeneous onesExpand
Picodroplet partitioned whole genome amplification of low biomass samples preserves genomic diversity for metagenomic analysis
BackgroundWhole genome amplification (WGA) is a challenging, key step in metagenomic studies of samples containing minute amounts of DNA, such as samples from low biomass environments. It is wellExpand
Marine Sediments Illuminate Chlamydiae Diversity and Evolution
The bacterial phylum Chlamydiae is so far composed of obligate symbionts of eukaryotic hosts. Well known for Chlamydiaceae, pathogens of humans and other animals, Chlamydiae also include so-calledExpand
Marine sediments illuminate Chlamydiae diversity and evolution
The bacterial phylum Chlamydiae, which is so far comprised of obligate symbionts of eukaryotic hosts, are well-known as human and animal pathogens1-3. However, the Chlamydiae also include so-calledExpand