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BacArena: Individual-based metabolic modeling of heterogeneous microbes in complex communities

• Eugen Bauer, Johannes Zimmermann, Federico Baldini, Ines Thiele, Christoph Kaleta
• PLoS Computational Biology
• 2017

Recent advances focusing on the metabolic interactions within and between cellular populations have emphasized the importance of microbial communities for human health. Constraint-based modeling,… (More)

The Microbiome Modeling Toolbox: from microbial interactions to personalized microbial communities.

• Federico Baldini, Almut Heinken, Laurent Heirendt, Stefanía Magnúsdóttir, Ronan M. T. Fleming, Ines Thiele
• Bioinformatics
• 2018

Motivation The application of constraint-based modeling to functionally analyze metagenomic data has been limited so far, partially due to the absence of suitable toolboxes. Results To address this… (More)

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