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The SILVA ribosomal RNA gene database project: improved data processing and web-based tools
SILVA (from Latin silva, forest, http://www.arb-silva.de) is a comprehensive web resource for up to date, quality-controlled databases of aligned ribosomal RNA (rRNA) gene sequences from theExpand
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SILVA: a comprehensive online resource for quality checked and aligned ribosomal RNA sequence data compatible with ARB
Sequencing ribosomal RNA (rRNA) genes is currently the method of choice for phylogenetic reconstruction, nucleic acid based detection and quantification of microbial diversity. The ARB software suiteExpand
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SINA: Accurate high-throughput multiple sequence alignment of ribosomal RNA genes
MOTIVATION In the analysis of homologous sequences, computation of multiple sequence alignments (MSAs) has become a bottleneck. This is especially troublesome for marker genes like the ribosomal RNAExpand
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Evaluation of general 16S ribosomal RNA gene PCR primers for classical and next-generation sequencing-based diversity studies
16S ribosomal RNA gene (rDNA) amplicon analysis remains the standard approach for the cultivation-independent investigation of microbial diversity. The accuracy of these analyses depends strongly onExpand
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Uniting the classification of cultured and uncultured bacteria and archaea using 16S rRNA gene sequences
Publicly available sequence databases of the small subunit ribosomal RNA gene, also known as 16S rRNA in bacteria and archaea, are growing rapidly, and the number of entries currently exceeds 4Expand
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The All-Species Living Tree project: a 16S rRNA-based phylogenetic tree of all sequenced type strains.
The signing authors together with the journal Systematic and Applied Microbiology (SAM) have started an ambitious project that has been conceived to provide a useful tool especially for theExpand
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Revealing structure and assembly cues for Arabidopsis root-inhabiting bacterial microbiota
The plant root defines the interface between a multicellular eukaryote and soil, one of the richest microbial ecosystems on Earth. Notably, soil bacteria are able to multiply inside roots as benignExpand
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The SILVA and “All-species Living Tree Project (LTP)” taxonomic frameworks
SILVA (from Latin silva, forest, http://www.arb-silva.de) is a comprehensive resource for up-to-date quality-controlled databases of aligned ribosomal RNA (rRNA) gene sequences from the Bacteria,Expand
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Substrate-Controlled Succession of Marine Bacterioplankton Populations Induced by a Phytoplankton Bloom
Blooming Succession Algal blooms in the ocean will trigger a succession of microbial predators and scavengers. Teeling et al. (p. 608) used a combination of microscopy, metagenomics, andExpand
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Bacterioplankton Compositions of Lakes and Oceans: a First Comparison Based on Fluorescence In Situ Hybridization
ABSTRACT Fluorescence in situ hybridization (FISH) with rRNA-targeted oligonucleotide probes was used to investigate the phylogenetic composition of bacterioplankton communities in several freshwaterExpand
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