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- Daniel J. Mandell, Evangelos A. Coutsias, Tanja Kortemme
- Nature Methods
- 2009

Supplementary Methods Supplementary Discussion Supplementary Figure 1 Geometric steps taken by the kinematic closure solver. Supplementary Figure 2 The Rosetta KIC loop reconstruction protocol.â€¦ (More)

- Evangelos A. Coutsias, Chaok Seok, Ken A. Dill
- Journal of computational chemistry
- 2004

A widely used way to compare the structures of biomolecules or solid bodies is to translate and rotate one structure with respect to the other to minimize the root-mean-square deviation (RMSD). Weâ€¦ (More)

- Evangelos A. Coutsias, Chaok Seok, Matthew P. Jacobson, Ken A. Dill
- Journal of Computational Chemistry
- 2004

We consider the problem of loop closure, i.e., of finding the ensemble of possible backbone structures of a chain segment of a protein molecule that is geometrically consistent with preceding andâ€¦ (More)

- Keith Bergeron, Evangelos A. Coutsias, J. P. Lynov
- 1999

Results of numerical simulations of a forced shear flow in an annular geometry are presented. The particular geometry used in this work reduces the effects of centrifugal and Coriolis forces.â€¦ (More)

We consider the polygonal lines in the complex plane C whose Nth vertex is defined by SN = âˆ‘N â€² n=0 exp(iÏ‰Ï€n 2) (with Ï‰ âˆˆ R), where the prime means that the first and last terms in the sum areâ€¦ (More)

- W. Michael Brown, Shawn Martin, Sara N. Pollock, Evangelos A. Coutsias, Jean-Paul Watson
- The Journal of chemical physics
- 2008

Dimensionality reduction approaches have been used to exploit the redundancy in a Cartesian coordinate representation of molecular motion by producing low-dimensional representations of molecularâ€¦ (More)

- Julian Lee, Dongseon Lee, Hahnbeom Park, Evangelos A. Coutsias, Chaok Seok
- Proteins
- 2010

Protein loops are often involved in important biological functions such as molecular recognition, signal transduction, or enzymatic action. The three dimensional structures of loops can provideâ€¦ (More)

- Bosco K. Ho, Evangelos A. Coutsias, Chaok Seok, Ken A. Dill
- Protein science : a publication of the Proteinâ€¦
- 2005

In proteins, the proline ring exists predominantly in two discrete states. However, there is also a small but significant amount of flexibility in the proline ring of high-resolution proteinâ€¦ (More)

An efficient spectral method for ordinary differential equations with rational function coefficients

- Evangelos A. Coutsias, Thomas Hagstrom, David J. Torres
- Math. Comput.
- 1996

We present some relations that allow the efficient approximate inversion of linear differential operators with rational function coefficients. We employ expansions in terms of a large class ofâ€¦ (More)

- Shawn Martin, Aidan Thompson, Evangelos A. Coutsias, Jean-Paul Watson
- The Journal of chemical physics
- 2010

Understanding energy landscapes is a major challenge in chemistry and biology. Although a wide variety of methods have been invented and applied to this problem, very little is understood about theâ€¦ (More)