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Cancer tissues in histopathology images exhibit abnormal patterns; it is of great clinical importance to label a histopathology image as having cancerous regions or not and perform the corresponding image segmentation. However , the detailed annotation of cancer cells is often an ambiguous and challenging task. In this paper, we propose a new learning(More)
OBJECTIVE To create an end-to-end system to identify temporal relation in discharge summaries for the 2012 i2b2 challenge. The challenge includes event extraction, timex extraction, and temporal relation identification. DESIGN An end-to-end temporal relation system was developed. It includes three subsystems: an event extraction system (conditional random(More)
In this paper, we tackle the problem of common object (multiple classes) discovery from a set of input images, where we assume the presence of one object class in each image. This problem is, loosely speaking, unsupervised since we do not know a priori about the object type, location, and scale in each image. We observe that the general task of object class(More)
This paper studies the effectiveness of accomplishing high-level tasks with a minimum of manual annotation and good feature representations for medical images. In medical image analysis, objects like cells are characterized by significant clinical features. Previously developed features like SIFT and HARR are unable to comprehensively represent such(More)
OBJECTIVE A system that translates narrative text in the medical domain into structured representation is in great demand. The system performs three sub-tasks: concept extraction, assertion classification, and relation identification. DESIGN The overall system consists of five steps: (1) pre-processing sentences, (2) marking noun phrases (NPs) and(More)
OBJECTIVE To develop a system to extract follow-up information from radiology reports. The method may be used as a component in a system which automatically generates follow-up information in a timely fashion. METHODS A novel method of combining an LSP (labeled sequential pattern) classifier with a CRF (conditional random field) recognizer was devised.(More)
Histopathology image segmentation plays a very important role in cancer diagnosis and therapeutic treatment. Existing supervised approaches for image segmentation require a large amount of high quality manual delineations (on pixels), which is often hard to obtain. In this paper, we propose a new algorithm along the line of weakly supervised learning; we(More)
OBJECTIVE To create a highly accurate coreference system in discharge summaries for the 2011 i2b2 challenge. The coreference categories include Person, Problem, Treatment, and Test. DESIGN An integrated coreference resolution system was developed by exploiting Person attributes, contextual semantic clues, and world knowledge. It includes three subsystems:(More)
Labeling a histopathology image as having cancerous regions or not is a critical task in cancer diagnosis; it is also clinically important to segment the cancer tissues and cluster them into various classes. Existing supervised approaches for image classification and segmentation require detailed manual annotations for the cancer pixels, which are(More)
OBJECTIVE In this paper, we focus on three aspects: (1) to annotate a set of standard corpus in Chinese discharge summaries; (2) to perform word segmentation and named entity recognition in the above corpus; (3) to build a joint model that performs word segmentation and named entity recognition. DESIGN Two independent systems of word segmentation and(More)