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- Publications
- Influence
Curved DNA without A-A: experimental estimation of all 16 DNA wedge angles.
- A. Bolshoy, P. McNamara, R. Harrington, E. Trifonov
- Chemistry, Medicine
- Proceedings of the National Academy of Sciences…
- 15 March 1991
The principal sequence feature responsible for intrinsic DNA curvature is generally assumed to be runs of adenines. However, according to the wedge model of DNA curvature, each dinucleotide step is… Expand
The Triplet Code From First Principles
- E. Trifonov
- Biology, Medicine
- Journal of biomolecular structure & dynamics
- 1 August 2004
Abstract Temporal order (“chronology”) of appearance of amino acids and their respective codons on evolutionary scene is reconstructed. A consensus chronology of amino acids is built on the basis of… Expand
The pitch of chromatin DNA is reflected in its nucleotide sequence.
- E. Trifonov, J. Sussman
- Biology, Medicine
- Proceedings of the National Academy of Sciences…
- 1 July 1980
A correlation analysis of chromatin DNA nucleotide sequences reveals the clear tendency of some of the dinucleotides to be repeated along the sequences with periods of 3 and about 10.5 bases. This… Expand
CURVATURE: software for the analysis of curved DNA
- E. Shpigelman, E. Trifonov, A. Bolshoy
- Mathematics, Computer Science
- Comput. Appl. Biosci.
- 1 August 1993
TLDR
Nucleosome DNA sequence pattern revealed by multiple alignment of experimentally mapped sequences.
- I. Ioshikhes, A. Bolshoy, K. Derenshteyn, M. Borodovsky, E. Trifonov
- Biology, Medicine
- Journal of molecular biology
- 20 September 1996
Five different algorithms have been applied for detecting DNA sequence pattern hidden in 204 DNA sequences collected from the literature which are experimentally found to be involved in nucleosome… Expand
3-, 10.5-, 200- and 400-base periodicities in genome sequences
- E. Trifonov
- Biology
- 2 January 1998
The above periodicities are the main hidden oscillating patterns detected so far in the genomic sequences. The 3-base periodicity is characteristic for the protein-coding sequences only. The source… Expand
Consensus temporal order of amino acids and evolution of the triplet code.
- E. Trifonov
- Biology, Medicine
- Gene
- 30 December 2000
Forty different single-factor criteria and multi-factor hypotheses about chronological order of appearance of amino acids in the early evolution are summarized in consensus ranking. All available… Expand
Linguistics of nucleotide sequences: morphology and comparison of vocabularies.
- V. Brendel, J. S. Beckmann, E. Trifonov
- Biology, Medicine
- Journal of biomolecular structure & dynamics
- 1 August 1986
The concept of "words" in continuous languages devoid of blanks is introduced and an operational definition of words given. With this novel concept nucleotide sequences become object for linguistic… Expand
Curved DNA: design, synthesis, and circularization.
- L. Ulanovsky, M. Bodner, E. Trifonov, M. Choder
- Chemistry, Medicine
- Proceedings of the National Academy of Sciences…
- 1 February 1986
Curved DNA molecules and unusually small circles have been obtained by ligation of synthetic 21-base precursors: (sequence in text). The ligation resulted in the formation of double-stranded… Expand
10-11 bp periodicities in complete genomes reflect protein structure and DNA folding
- H. Herzel, O. Weiss, E. Trifonov
- Biology, Medicine
- Bioinform.
- 1 March 1999
TLDR