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- Karin Lagesen, Peter F. Hallin, Einar Andreas Rødland, Hans-Henrik Stærfeldt, Torbjørn Rognes, David Wayne Ussery
- Nucleic acids research
- 2007
The publication of a complete genome sequence is usually accompanied by annotations of its genes. In contrast to protein coding genes, genes for ribosomal RNA (rRNA) are often poorly or… (More)
- Valerie Wood, Ryan Gwilliam, +130 authors P. Nurse
- Nature
- 2002
We have sequenced and annotated the genome of fission yeast (Schizosaccharomyces pombe), which contains the smallest number of protein-coding genes yet recorded for a eukaryote: 4,824. The… (More)
- Mette V. Larsen, Salvatore Luciano Cosentino, +8 authors Ole Lund
- Journal of clinical microbiology
- 2012
Accurate strain identification is essential for anyone working with bacteria. For many species, multilocus sequence typing (MLST) is considered the "gold standard" of typing, but it is traditionally… (More)
- Carsten Kröger, Shane C. Dillon, +18 authors Jay C. D. Hinton
- Proceedings of the National Academy of Sciences…
- 2012
More than 50 y of research have provided great insight into the physiology, metabolism, and molecular biology of Salmonella enterica serovar Typhimurium (S. Typhimurium), but important gaps in our… (More)
- Marie Skovgaard, Lars Juhl Jensen, Søren Brunak, David Wayne Ussery, Anders Krogh
- Trends in genetics : TIG
- 2001
In sequenced microbial genomes, some of the annotated genes are actually not protein-coding genes, but rather open reading frames that occur by chance. Therefore, the number of annotated genes is… (More)
- Anders Gorm Pedersen, Lars Juhl Jensen, Søren Brunak, Hans Henrik Staerfeldt, David Wayne Ussery
- Journal of molecular biology
- 2000
We have performed a computational analysis of DNA structural features in 18 fully sequenced prokaryotic genomes using models for DNA curvature, DNA flexibility, and DNA stability. The structural… (More)
- Oksana Lukjancenko, Trudy M. Wassenaar, David Wayne Ussery
- Microbial Ecology
- 2010
Escherichia coli is an important component of the biosphere and is an ideal model for studies of processes involved in bacterial genome evolution. Sixty-one publically available E. coli and Shigella… (More)
- Henrik Bjørn Nielsen, Mathieu Almeida, +49 authors S. Dusko Ehrlich
- Nature Biotechnology
- 2014
Most current approaches for analyzing metagenomic data rely on comparisons to reference genomes, but the microbial diversity of many environments extends far beyond what is covered by reference… (More)
- Carsten Friis, Trudy M. Wassenaar, +8 authors David Wayne Ussery
- PloS one
- 2010
Campylobacter jejuni strain M1 (laboratory designation 99/308) is a rarely documented case of direct transmission of C. jejuni from chicken to a person, resulting in enteritis. We have sequenced the… (More)
- E. Fidelma Boyd, Ana Luisa V. Cohen, +4 authors Michelle A. Parent
- BMC Microbiology
- 2008
Vibrio parahaemolyticus is abundant in the aquatic environment particularly in warmer waters and is the leading cause of seafood borne gastroenteritis worldwide. Prior to 1995, numerous V.… (More)