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- Karin Lagesen, Peter F. Hallin, Einar Andreas Rødland, Hans-Henrik Stærfeldt, Torbjørn Rognes, David Wayne Ussery
- Nucleic acids research
- 2007
The publication of a complete genome sequence is usually accompanied by annotations of its genes. In contrast to protein coding genes, genes for ribosomal RNA (rRNA) are often poorly or… (More)
- Mette V. Larsen, Salvatore Luciano Cosentino, +8 authors Ole Lund
- Journal of clinical microbiology
- 2012
Accurate strain identification is essential for anyone working with bacteria. For many species, multilocus sequence typing (MLST) is considered the "gold standard" of typing, but it is traditionally… (More)
- Valerie Wood, Ryan Gwilliam, +130 authors P. Nurse
- Nature
- 2002
We have sequenced and annotated the genome of fission yeast (Schizosaccharomyces pombe), which contains the smallest number of protein-coding genes yet recorded for a eukaryote: 4,824. The… (More)
- Carsten Kröger, Shane C. Dillon, +18 authors Jay C. D. Hinton
- Proceedings of the National Academy of Sciences…
- 2012
More than 50 y of research have provided great insight into the physiology, metabolism, and molecular biology of Salmonella enterica serovar Typhimurium (S. Typhimurium), but important gaps in our… (More)
- Oksana Lukjancenko, Trudy M. Wassenaar, David Wayne Ussery
- Microbial Ecology
- 2010
Escherichia coli is an important component of the biosphere and is an ideal model for studies of processes involved in bacterial genome evolution. Sixty-one publically available E. coli and Shigella… (More)
- Marie Skovgaard, Lars Juhl Jensen, Søren Brunak, David Wayne Ussery, Anders Krogh
- Trends in genetics : TIG
- 2001
In sequenced microbial genomes, some of the annotated genes are actually not protein-coding genes, but rather open reading frames that occur by chance. Therefore, the number of annotated genes is… (More)
- Cristiane Thompson, Ana Carolina Paulo Vicente, +6 authors Fabiano L. Thompson
- BMC Evolutionary Biology
- 2009
Vibrio taxonomy has been based on a polyphasic approach. In this study, we retrieve useful taxonomic information (i.e. data that can be used to distinguish different taxonomic levels, such as species… (More)
- W. Greg Miller, Craig T Parker, +11 authors Robert E. Mandrell
- PloS one
- 2007
BACKGROUND
Arcobacter butzleri is a member of the epsilon subdivision of the Proteobacteria and a close taxonomic relative of established pathogens, such as Campylobacter jejuni and Helicobacter… (More)
- Faye M Barnard, Michael F Loughlin, +4 authors Peter J. Jenks
- Molecular microbiology
- 2004
Although successful and persistent colonization of the gastric mucosa depends on the ability to respond to changing environmental conditions and co-ordinate the expression of virulence factors during… (More)
- Dawn Field, Linda A Amaral-Zettler, +20 authors John C. Wooley
- PLoS biology
- 2011
A vast and rich body of information has grown up as a result of the world's enthusiasm for 'omics technologies. Finding ways to describe and make available this information that maximise its… (More)