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BACKGROUND High density genetic maps of plants have, nearly without exception, made use of marker datasets containing missing or questionable genotype calls derived from a variety of genic and non-genic or anonymous markers, and been presented as a single linear order of genetic loci for each linkage group. The consequences of missing or erroneous data(More)
This report describes the rationale, approaches, organization, and resource development leading to a large-scale deletion bin map of the hexaploid (2n = 6x = 42) wheat genome (Triticum aestivum L.). Accompanying reports in this issue detail results from chromosome bin-mapping of expressed sequence tags (ESTs) representing genes onto the seven homoeologous(More)
BACKGROUND A genome-wide assessment of nucleotide diversity in a polyploid species must minimize the inclusion of homoeologous sequences into diversity estimates and reliably allocate individual haplotypes into their respective genomes. The same requirements complicate the development and deployment of single nucleotide polymorphism (SNP) markers in(More)
GrainGenes, http://www.graingenes.org, is the international database for the wheat, barley, rye and oat genomes. For these species it is the primary repository for information about genetic maps, mapping probes and primers, genes, alleles and QTLs. Documentation includes such data as primer sequences, polymorphism descriptions, genotype and trait scoring(More)
GrainGenes (http://wheat.pw.usda.gov) is an international database for genetic and genomic information about Triticeae species (wheat [Triticum aestivum], barley [Hordeum vulgare], rye [Secale cereale], and their wild relatives) and oat (Avena sativa) and its wild relatives. A major strength of the GrainGenes project is the interaction of the curators with(More)
The American Journal of PhysioZ-ogy: Endocrinology and Metabo-Zism (ISSN-0193-1849) is published monthly (two volumes a year) by the American Physiological Society , 9650 Rockville Pike, Bethesda, MD 20814-3991. Subscriptions are accepted on a calendar-year basis only. Single Copies and Back Issues: When available, $30.00 each postpaid. Second-class postage(More)
• Analyzed high-throughput genomic, genetic, and epigenetic data sets in glioma. • Developed a tool for reverse engineering gene regulatory networks via parallel programming. • Involved in developing a web-based tool for assigning glioma patients to specific molecular subtypes. • Involved in developing a web-based tool for reporting copy number alterations(More)