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Genome-wide characterization of simple sequence repeats in cucumber (Cucumis sativus L.)
TLDR
The cucumber genome is rich in microsatellites; AT and AAG are the most abundant repeat motifs in genomic and EST sequences of cucumber, respectively; the level of polymorphism seems to be positively associated with the number of repeat units in the microsatellite. Expand
Using next-generation sequencing approaches to isolate simple sequence repeat (SSR) loci in the plant sciences.
TLDR
In the future, NGS technologies will massively increase the number of SSRs and other genetic markers available to conduct genetic research in understudied but economically important crops such as cranberry. Expand
De novo assembly and characterization of the carrot transcriptome reveals novel genes, new markers, and genetic diversity
TLDR
This study confirmed the potential of short read platforms for de novo EST assembly and identification of genetic polymorphisms in carrot, and produced the first large-scale transcriptome of carrot, a species lacking genomic resources. Expand
A high-quality carrot genome assembly provides new insights into carotenoid accumulation and asterid genome evolution
TLDR
A high-quality chromosome-scale assembly and analysis of the carrot genome is reported, the first sequenced genome to include a comparative evolutionary analysis among members of the euasterid II clade, and a candidate gene, DCAR_032551, is identified that conditions carotenoid accumulation (Y) in carrot taproot and is coexpressed with several isoprenoid biosynthetic genes. Expand
Genetic structure and domestication of carrot (Daucus carota subsp. sativus) (Apiaceae).
TLDR
Comparing the genetic diversity of wild and cultivated accessions suggested the absence of a genetic bottleneck during carrot domestication, and results suggest an origin of domesticated carrot in Central Asia. Expand
Microsatellite isolation and marker development in carrot - genomic distribution, linkage mapping, genetic diversity analysis and marker transferability across Apiaceae
TLDR
The addition of 55 SSRs to the carrot map, together with marker characterizations in six other mapping populations, will facilitate future comparative mapping studies and integration of carrot maps. Expand
De novo assembly of the carrot mitochondrial genome using next generation sequencing of whole genomic DNA provides first evidence of DNA transfer into an angiosperm plastid genome
TLDR
A new aspect of intercompartmental genome interaction was reported providing the first evidence for DNA transfer into an angiosperm plastid genome. Expand
Characterization of a deep-coverage carrot (Daucus carota L.) BAC library and initial analysis of BAC-end sequences
TLDR
This report reports on the synthesis and characterization of a bacterial artificial chromosome (BAC) library of carrot, which has highest homology to protein-coding sequences from tomato and will aid carrot breeding and genetics. Expand
Against the traffic
TLDR
Findings open interesting questions about the evolution of organellar genomes and mobile genetic elements and provide a useful plastid marker to phylogenetically delineate species relationships within the Scandiceae clade. Expand
Comparative FISH mapping of Daucus species (Apiaceae family)
TLDR
This work integrates the carrot linkage groups with pachytene chromosomes by fluorescent in situ hybridization (FISH) mapping genetically anchored bacterial artificial chromosomes (BACs) to physically locate genetically unanchored DNA sequences, reveal relationships between genetic and physical distances, and address chromosome evolution in Daucus. Expand
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