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- Publications
- Influence
OrthoMCL: identification of ortholog groups for eukaryotic genomes.
- L. Li, C. Stoeckert, D. Roos
- Biology, Medicine
- Genome research
- 1 September 2003
The identification of orthologous groups is useful for genome annotation, studies on gene/protein evolution, comparative genomics, and the identification of taxonomically restricted sequences.… Expand
Genome sequence of the human malaria parasite Plasmodium falciparum
- M. J. Gardner, N. Hall, +42 authors B. Barrell
- Biology, Medicine
- Nature
- 3 October 2002
The parasite Plasmodium falciparum is responsible for hundreds of millions of cases of malaria, and kills more than one million African children annually. Here we report an analysis of the genome… Expand
PlasmoDB: a functional genomic database for malaria parasites
- C. Aurrecoechea, J. Brestelli, +22 authors H. Wang
- Biology, Medicine
- Nucleic Acids Res.
- 28 October 2008
PlasmoDB (http://PlasmoDB.org) is a functional genomic database for Plasmodium spp. that provides a resource for data analysis and visualization in a gene-by-gene or genome-wide scale. PlasmoDB… Expand
OrthoMCL-DB: querying a comprehensive multi-species collection of ortholog groups
- F. Chen, A. Mackey, C. Stoeckert, D. Roos
- Biology, Computer Science
- Nucleic Acids Res.
- 28 December 2005
TLDR
TriTrypDB: a functional genomic resource for the Trypanosomatidae
- M. Aslett, C. Aurrecoechea, +41 authors H. Wang
- Biology, Computer Science
- Nucleic Acids Res.
- 20 October 2009
TLDR
ToxoDB: an integrated Toxoplasma gondii database resource
- Bindu Gajria, A. Bahl, +12 authors B. Brunk
- Biology, Computer Science
- Nucleic Acids Res.
- 14 November 2007
TLDR
Using OrthoMCL to assign proteins to OrthoMCL-DB groups or to cluster proteomes into new ortholog groups.
- S. Fischer, B. Brunk, +6 authors C. Stoeckert
- Biology, Medicine
- Current protocols in bioinformatics
- 1 September 2011
OrthoMCL is an algorithm for grouping proteins into ortholog groups based on their sequence similarity. OrthoMCL-DB is a public database that allows users to browse and view ortholog groups that were… Expand
Molecular tools for genetic dissection of the protozoan parasite Toxoplasma gondii.
- D. Roos, R. Donald, N. Morrissette, A. Moulton
- Biology, Medicine
- Methods in cell biology
- 1994
Publisher Summary The genetic structure of Toxoplasma gondii is notable chiefly for being relatively conventional— similar to that of its mammalian host cells with respect to gene organization, codon… Expand
A Plastid of Probable Green Algal Origin in Apicomplexan Parasites
- Sabine Köhler, C. Delwiche, +5 authors D. Roos
- Biology, Medicine
- Science
- 7 March 1997
Protozoan parasites of the phylum Apicomplexa contain three genetic elements: the nuclear and mitochondrial genomes characteristic of virtually all eukaryotic cells and a 35-kilobase circular… Expand
Cytoskeletal Components of an Invasion Machine—The Apical Complex of Toxoplasma gondii
- K. Hu, J. Johnson, +6 authors J. Murray
- Biology, Medicine
- PLoS pathogens
- 1 February 2006
The apical complex of Toxoplasma gondii is widely believed to serve essential functions in both invasion of its host cells (including human cells), and in replication of the parasite. The… Expand