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RDP: detection of recombination amongst aligned sequences
- D. Martin, E. Rybicki
- BiologyBioinform.
- 1 June 2000
SUMMARY
Recombination Detection Program (RDP) is a program that applies a pairwise scanning approach to the detection of recombination amongst a group of aligned DNA sequences. The software runs…
RDP3: a flexible and fast computer program for analyzing recombination
- D. Martin, P. Lemey, M. Lott, V. Moulton, D. Posada, P. Lefeuvre
- Biology, Computer ScienceBioinform.
- 26 August 2010
TLDR
RDP4: Detection and analysis of recombination patterns in virus genomes
- D. Martin, B. Murrell, Michael Golden, Arjun Khoosal, B. Muhire
- BiologyVirus evolution
- 1 March 2015
TLDR
RDP2: recombination detection and analysis from sequence alignments
- D. Martin, C. Williamson, D. Posada
- Biology, Computer ScienceBioinform.
- 15 January 2005
UNLABELLED
RDP2 is a Windows 95/XP program that examines nucleotide sequence alignments and attempts to identify recombinant sequences and recombination breakpoints using 10 published recombination…
Detection of a SARS-CoV-2 variant of concern in South Africa
- H. Tegally, E. Wilkinson, T. de Oliveira
- BiologyNature
- 2021
TLDR
SDT: A Virus Classification Tool Based on Pairwise Sequence Alignment and Identity Calculation
- B. Muhire, A. Varsani, D. Martin
- Computer SciencePloS one
- 26 September 2014
The perpetually increasing rate at which viral full-genome sequences are being determined is creating a pressing demand for computational tools that will aid the objective classification of these…
Recombination Patterns in Aphthoviruses Mirror Those Found in Other Picornaviruses
- L. Heath, E. van der Walt, A. Varsani, D. Martin
- BiologyJournal of Virology
- 13 September 2006
TLDR
Revision of Begomovirus taxonomy based on pairwise sequence comparisons
- Judith K. Brown, F. Zerbini, A. Varsani
- BiologyArchives of Virology
- 18 April 2015
TLDR
Gene-wide identification of episodic selection.
- B. Murrell, S. Weaver, Sergei L. Kosakovsky Pond
- BiologyMolecular biology and evolution
- 19 February 2015
TLDR
Robust inference of positive selection from recombining coding sequences
- K. Scheffler, D. Martin, C. Seoighe
- BiologyBioinform.
- 29 September 2006
TLDR
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