kingroup: a program for pedigree relationship reconstruction and kin group assignments using genetic markers
- D. Konovalov, Clint Manning, M. Henshaw
- Psychology
- 1 December 2004
Kingroup implements a new method for reconstructing groups of kin that share a common relationship by estimating an overall likelihood for alternative partitions by implementing a maximum likelihood approach to pedigree relationships reconstruction and kin group assignment.
DeepWeeds: A Multiclass Weed Species Image Dataset for Deep Learning
- A. Olsen, D. Konovalov, Ronald D. White
- Computer Science, Environmental ScienceScientific Reports
- 9 October 2018
This paper presents a baseline for classification performance on the dataset using the benchmark deep learning models, Inception-v3 and ResNet-50, and achieves an average classification accuracy of 95.1% and 95.7%, respectively.
A realistic fish-habitat dataset to evaluate algorithms for underwater visual analysis
- Alzayat Saleh, I. Laradji, D. Konovalov, M. Bradley, David Vázquez, M. Sheaves
- Computer Science, Environmental ScienceScientific Reports
- 28 August 2020
This work presents DeepFish as a benchmark suite with a large-scale dataset to train and test methods for several computer vision tasks, and collects point-level and segmentation labels to have a more comprehensive fish analysis benchmark.
Modified SIMPSON O(n3) algorithm for the full sibship reconstruction problem
- D. Konovalov, Nigel Bajema, B. Litow
- Computer ScienceBioinform.
- 15 October 2005
A modified version of the SIMPSON (MS) algorithm that behaves as O(n(3)) and achieves the same or better accuracy when compared with the original algorithm, which has been shown that, in theory, theSIMPSON algorithm runs in non-polynomial time, significantly limiting its usefulness.
Benchmarking of QSAR Models for Blood-Brain Barrier Permeation
- D. Konovalov, D. Coomans, E. Deconinck, Y. Heyden
- Chemistry, BiologyJournal of Chemical Information and Modeling
- 30 June 2007
Using the largest available database of 328 blood-brain distribution (logBB) values, a quantitative benchmark was proposed to allow for a consistent comparison of the predictive accuracy of current…
Partition-distance via the assignment problem
- D. Konovalov, B. Litow, Nigel Bajema
- Computer ScienceBioinform.
- 15 May 2005
An algorithm is presented that very efficiently reduces the partition-distance calculation to the classic assignment problem of weighted bipartite graphs that has known polynomial-time solutions.
Robust Cross-Validation of Linear Regression QSAR Models
- D. Konovalov, L. Llewellyn, Y. Heyden, D. Coomans
- BiologyJournal of Chemical Information and Modeling
- 1 October 2008
It was found that (1) a robust version of MLR should always be preferred over the ordinary-least-squares MLR, regardless of the degree of outlier contamination and that (2) the model's predictive power should only be assessed via robust statistics.
Underwater Fish Detection with Weak Multi-Domain Supervision
- D. Konovalov, Alzayat Saleh, M. Bradley, M. Sankupellay, S. Marini, M. Sheaves
- Environmental ScienceIEEE International Joint Conference on Neural…
- 26 May 2019
This work presents a labelling-efficient method of training a CNN-based fish-detector on relatively small numbers (4,000) of project-domain underwater fish/no-fish images from 20 different habitats, using the Xception CNN as the base.
Bird call recognition using deep convolutional neural network, ResNet-50
- M. Sankupellay, D. Konovalov
- Computer Science
- 2018
This paper uses ResNet-50, a deep convolutional neural network architecture for automated bird call recognition in acoustic recordings, and uses a publicly available dataset consisting of calls from 46 different bird species to achieve 60%-72% accuracy of birdcall recognition.
Propolis Research in Russia
- V. V. Fedotova, D. Konovalov
- MedicineIndian Journal of Pharmaceutical Education and…
- 11 November 2019
The objective was to establish an experimental procedure and show direct AFM measurements that unequivocally can be assigned as a type of ‘spatially aggregating agent’ and show high AFM levels in mice.
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