• Publications
  • Influence
The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla
TLDR
A high-quality draft of the genome sequence of grapevine is obtained from a highly homozygous genotype, revealing the contribution of three ancestral genomes to the grapevine haploid content and explaining the chronology of previously described whole-genome duplication events in the evolution of flowering plants. Expand
Molecular and phylogenetic analyses of the complete MADS-box transcription factor family in Arabidopsis: new openings to the MADS world.
TLDR
This study provides a solid base for functional genomics studies into this important family of plant regulatory genes, including the poorly characterized group of M-type MADS-box proteins. Expand
The high-quality draft genome of peach (Prunus persica) identifies unique patterns of genetic diversity, domestication and genome evolution
TLDR
Comparisons showed that peach has not undergone recent whole-genome duplication, and even though the ancestral triplicated blocks in peach are fragmentary compared to those in grape, all seven paleosets of paralogs from the putative paleoancestor are detectable. Expand
UTRdb and UTRsite (RELEASE 2010): a collection of sequences and regulatory motifs of the untranslated regions of eukaryotic mRNAs
TLDR
In the current update, the UTR entries have been organized in a gene-centric structure to better visualize and retrieve 5′ and 3′UTR variants generated by alternative initiation and termination of transcription and alternative splicing. Expand
Inference of the phylogenetic position of oxymonads based on nine genes: support for metamonada and excavata.
TLDR
It is demonstrated that the genes are in conflict regarding the position of oxymonads, and a well-supported group of Metamonada that branched weakly with euglenozoans is recovered, providing conditional support for the existence of Excavata. Expand
Iron hydrogenases--ancient enzymes in modern eukaryotes.
TLDR
Current knowledge of the distribution, evolution and biochemistry of [Fe]-hydrogenases is summarized. Expand
Mitochondria and hydrogenosomes are two forms of the same fundamental organelle.
TLDR
It seems possible that all eukaryotes may eventually be shown to contain an organelle of mitochondrial ancestry, to which different types of biochemistry can be targeted. Expand
Bioinformatics approaches for genomics and post genomics applications of next-generation sequencing
TLDR
A broad overview of bioinformatics approaches that have been introduced for several genomics and functional genomics applications of next-generation sequencing is provided. Expand
Large-scale detection and analysis of RNA editing in grape mtDNA by RNA deep-sequencing
TLDR
Solexa/Illumina and SOLiD platforms showed different characteristics with respect to the specific issue of large-scale editing analysis, and the combined approach presented here reduces the false positive rate of discovery of editing events. Expand
Addressing the Role of microRNAs in Reprogramming Leaf Growth during Drought Stress in Brachypodium distachyon
TLDR
Differential expression analyses and miRNA-target predictions suggest evidence for regulatory networks controlling cell division and expansion in normal and stressed conditions in Brachypodium distachyon. Expand
...
1
2
3
4
5
...