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The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools.
- J. Thompson, T. Gibson, F. Plewniak, F. Jeanmougin, D. Higgins
- Medicine, Biology
- Nucleic acids research
- 1 December 1997
CLUSTAL X is a new windows interface for the widely-used progressive multiple sequence alignment program CLUSTAL W. The new system is easy to use, providing an integrated system for performing… Expand
Clustal W and Clustal X version 2.0
- Mark A. Larkin, G. Blackshields, +10 authors D. Higgins
- Medicine, Computer Science
- 1 November 2007
SUMMARY The Clustal W and Clustal X multiple sequence alignment programs have been completely rewritten in C++. This will facilitate the further development of the alignment algorithms in the future… Expand
Clustal w: improving the sensitivity of progressive multiple alignment through sequence weighting
T-Coffee: A novel method for fast and accurate multiple sequence alignment.
We describe a new method (T-Coffee) for multiple sequence alignment that provides a dramatic improvement in accuracy with a modest sacrifice in speed as compared to the most commonly used… Expand
Multiple sequence alignment with the Clustal series of programs
- C. Ramu, H. Sugawara, +4 authors J. D. Thompson
- Biology, Computer Science
- Nucleic Acids Res.
- 1 July 2003
The Clustal series of programs are widely used in molecular biology for the multiple alignment of both nucleic acid and protein sequences and for preparing phylogenetic trees. The popularity of the… Expand
CLUSTAL: a package for performing multiple sequence alignment on a microcomputer.
An approach for performing multiple alignments of large numbers of amino acid or nucleotide sequences is described. The method is based on first deriving a phylogenetic tree from a matrix of all… Expand
CLUSTAL V: improved software for multiple sequence alignment
The CLUSTAL package of multiple sequence alignment programs has been completely rewritten and many new features added. The new software is a single program called CLUSTAL V, which is written in C and… Expand
SAGA: sequence alignment by genetic algorithm.
We describe a new approach to multiple sequence alignment using genetic algorithms and an associated software package called SAGA. The method involves evolving a population of alignments in a quasi… Expand
Clustal Omega, accurate alignment of very large numbers of sequences.
Clustal Omega is a completely rewritten and revised version of the widely used Clustal series of programs for multiple sequence alignment. It can deal with very large numbers (many tens of thousands)… Expand
Fast and sensitive multiple sequence alignments on a microcomputer
A strategy is described for the rapid alignment of many long nucleic acid or protein sequences on a microcomputer. The program described can handle up to 100 sequences of 1200 residues each. The… Expand