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Autophagic Degradation of the 26S Proteasome Is Mediated by the Dual ATG8/Ubiquitin Receptor RPN10 in Arabidopsis.
- R. S. Marshall, F. Li, D. C. Gemperline, A. Book, R. Vierstra
- Biology, Medicine
- Molecular cell
- 18 June 2015
Autophagic turnover of intracellular constituents is critical for cellular housekeeping, nutrient recycling, and various aspects of growth and development in eukaryotes. Here we show that autophagy… Expand
mwaskom/seaborn: v0.9.0 (July 2018)
mwaskom/seaborn: v0.10.0 (January 2020)
Struct-NB: predicting protein-RNA binding sites using structural features
- F. Towfic, Cornelia Caragea, D. C. Gemperline, D. Dobbs, Vasant G Honavar
- Biology, Medicine
- Int. J. Data Min. Bioinform.
We analyse sequence and structural features of protein-RNA interfaces using RB-147, a non-redundant dataset of protein chains from RNA-binding proteins extracted from the PDB. Expand
Purification of 26S Proteasomes and Their Subcomplexes from Plants.
The 26S proteasome is a highly dynamic, multisubunit, ATP-dependent protease that plays a central role in cellular housekeeping and many aspects of plant growth and development by degrading aberrant… Expand
Morpheus Spectral Counter: A computational tool for label‐free quantitative mass spectrometry using the Morpheus search engine
- D. C. Gemperline, M. Scalf, L. M. Smith, R. Vierstra
- Computer Science, Medicine
- 1 March 2016
We present Morpheus Spectral Counter (MSpC) as the first computational tool that directly calculates NSAF values from output obtained from Morpheus, a fast, open‐source peptide‐MS/MS matching engine compatible with high‐resolution accuratemass instruments. Expand
mwaskom/seaborn: v0.11.0 (Sepetmber 2020)
Chapter 24 Purification of 26 S Proteasomes and Their Sub-complexes From Plants
The 26S proteasome is a highly dynamic, multi-subunit, ATP-dependent protease that plays a central role in cellular housekeeping and many aspects of plant growth and development by degrading aberrant… Expand