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In this paper, we describe the Machine Learning system, asium 1 , which learns Subcaterorization Frames of verbs and ontologies from the syntactic parsing of technical texts in natural language. The restrictions of selection in the subcategorization frames are lled by the ontology's concepts. Applications requiring such knowledge are crucial and numerous.(More)
The goal of the Genic Regulation Network task (GRN) is to extract a regulation network that links and integrates a variety of molecular interactions between genes and proteins of the well-studied model bacterium Bacillus subtilis. It is an extension of the BI task of BioNLP-ST'11. The corpus is composed of sentences selected from publicly available PubMed(More)
This paper describes Mo'K, a configurable workbench that supports the development of conceptual clustering methods for ontology building. Mo'K is intended to assist ontology developers in the exploratory process of defining the most suitable learning methods for a given task. To do so, it provides facilities for evaluation, comparison, characterization and(More)
The BioNLP Shared Task 2013 is the third edition of the BioNLP Shared Task series that is a community-wide effort to address fine-grained, structural information extraction from biomedical literature. The BioNLP Shared Task 2013 was held from January to April 2013. Six main tasks were proposed. 38 final submissions were received, from 22 teams. The results(More)
In this paper, we propose a method to adapt a general parser (Link Parser) to sublanguages, focusing on the parsing of texts in biology. Our main proposal is the use of terminology (iden-tiication and analysis of terms) in order to reduce the complexity of the text to be parsed. Several other strategies are explored and nally combined among which text(More)
This paper presents the Bacteria Biotope task as part of the BioNLP Shared Tasks 2011. The Bacteria Biotope task aims at extracting the location of bacteria from scientific Web pages. Bacteria location is a crucial knowledge in biology for phenotype studies. The paper details the corpus specification, the evaluation metrics, summarizes and discusses the(More)