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With the quantity of genomic data increasing at an exponential rate, it is imperative that these data be captured electronically, in a standard format. Standardization activities must proceed within the auspices of open-access and international working bodies. To tackle the issues surrounding the development of better descriptions of genomic investigations,(More)
Finally, we certainly agree that the PDB should have a standard data representation, although a well-designed ontology plays less of a role than that championed by King and his coauthors. Even so, the legacy requirements of our community and the dynamics of changing a global resource require that it be developed over time and in collaboration with our(More)
UNLABELLED The first open source software suite for experimentalists and curators that (i) assists in the annotation and local management of experimental metadata from high-throughput studies employing one or a combination of omics and other technologies; (ii) empowers users to uptake community-defined checklists and ontologies; and (iii) facilitates(More)
This article summarizes the motivation for, and the proceedings of, the first ISA-TAB workshop held December 6-8, 2007, at the EBI, Cambridge, UK. This exploratory workshop, organized by members of the Microarray Gene Expression Data (MGED) Society's Reporting Structure for Biological Investigations (RSBI) working group, brought together a group of(More)
InvertNet, one of the three Thematic Collection Networks (TCNs) funded in the first round of the U.S. National Science Foundation's Advancing Digitization of Biological Collections (ADBC) program, is tasked with providing digital access to ~60 million specimens housed in 22 arthropod (primarily insect) collections at institutions distributed throughout the(More)
The present article proposes the adoption of a community-defined, uniform, generic description of the core attributes of biological databases, BioDBCore. The goals of these attributes are to provide a general overview of the database landscape, to encourage consistency and interoperability between resources and to promote the use of semantic and syntactic(More)
The XML-based Real-Time PCR Data Markup Language (RDML) has been developed by the RDML consortium (http://www.rdml.org) to enable straightforward exchange of qPCR data and related information between qPCR instruments and third party data analysis software, between colleagues and collaborators and between experimenters and journals or public repositories. We(More)
BACKGROUND Incorporation of ontologies into annotations has enabled 'semantic integration' of complex data, making explicit the knowledge within a certain field. One of the major bottlenecks in developing bio-ontologies is the lack of a unified methodology. Different methodologies have been proposed for different scenarios, but there is no agreed-upon(More)
  • Adam Mclendon Eames, Chris Taylor, Buddika Kottahachchi, Andy
  • 2005
Wireless sensor networks can provide real time navigation instructions to robots or people attempting to travel in hazardous environments. This thesis presents the design, analysis, and implementation of a distributed system providing path planning and threat avoidance capability to mobile users. Contributions of the system include a unique framework for(More)
This paper reports on a comparative study of three Prolog trace packages. Forty-three students of an introductory Prolog course solved five different Prolog programming problems in each of three different conditions (using isomorphic problem variants to disguise recurring tasks). Each of the three conditions provided subjects with static(More)