Carl Tony Fakhry

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Inference of active regulatory cascades under specific molecular and environmental perturbations is a recurring task in transcriptional data analysis. Commercial tools based on large, manually curated networks of causal relationships offering such functionality have been used in thousands of articles in the biomedical literature. The adoption and extension(More)
We propose an unsupervised method for extracting causal relations between biomedical entities using stochastic difference equations (SDE). Our method attempts to generalize the propagation of relevance in medical sentences in order to extract related biomedical terms and the semantic relation between them. We model the propagation of relevance in candidate(More)
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