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The human genome browser at UCSC.
As vertebrate genome sequences near completion and research refocuses to their analysis, the issue of effective genome annotation display becomes critical. A mature web tool for rapid and reliable… Expand
The UCSC Table Browser data retrieval tool
The University of California Santa Cruz (UCSC) Table Browser (http://genome.ucsc.edu/cgi-bin/hgText) provides text-based access to a large collection of genome assemblies and annotation data stored in the Genome Browser Database. Expand
The UCSC Genome Browser Database
The University of California Santa Cruz (UCSC) Genome Browser Database is an up to date source for genome sequence data integrated with a large collection of related annotations. Expand
Initial sequencing and comparative analysis of the mouse genome
The sequence of the mouse genome is a key informational tool for understanding the contents of the human genome and a key experimental tool for biomedical research. Here, we report the results of an… Expand
The UCSC genome browser database: update 2007
This is an open access version of the Genome Browser Database (GBD) and a family of tools for accessing this database. Expand
Knowledge-based analysis of microarray gene expression data by using support vector machines.
- M. Brown, W. N. Grundy, +5 authors D. Haussler
- Medicine, Computer Science
- Proceedings of the National Academy of Sciences…
- 4 January 2000
We introduce a method of functionally classifying genes by using gene expression data from DNA microarray hybridization experiments. Expand
The UCSC Genome Browser Database: update 2006
The University of California Santa Cruz Genome Browser Database (GBD) contains sequence and annotation data for the genomes of about a dozen vertebrate species and several major model organisms. Expand
Chromosome-scale shotgun assembly using an in vitro method for long-range linkage.
- Nicholas H. Putnam, Brendan L O'Connell, +10 authors R. E. Green
- Biology, Medicine
- Genome research
- 18 February 2015
Long-range and highly accurate de novo assembly from short-read data is one of the most pressing challenges in genomics. Recently, it has been shown that read pairs generated by proximity ligation of… Expand
Genomewide Analysis of mRNA Processing in Yeast Using Splicing-Specific Microarrays
Introns interrupt almost every eukaryotic protein-coding gene, yet how the splicing apparatus interprets the genome during messenger RNA (mRNA) synthesis is poorly understood. We designed microarrays… Expand
Transcriptome and Genome Conservation of Alternative Splicing Events in Humans and Mice
- C. Sugnet, W. Kent, M. Ares, D. Haussler
- Biology, Computer Science
- Pacific Symposium on Biocomputing
- 1 December 2003
Combining mRNA and EST data in splicing graphs with whole genome alignments, we discover alternative splicing events that are conserved in both human and mouse transcriptomes, with 2,698 total events. Expand