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The human genome browser at UCSC.
As vertebrate genome sequences near completion and research refocuses to their analysis, the issue of effective genome annotation display becomes critical. A mature web tool for rapid and reliableExpand
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The UCSC Table Browser data retrieval tool
TLDR
The University of California Santa Cruz (UCSC) Table Browser (http://genome.ucsc.edu/cgi-bin/hgText) provides text-based access to a large collection of genome assemblies and annotation data stored in the Genome Browser Database. Expand
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The UCSC Genome Browser Database
TLDR
The University of California Santa Cruz (UCSC) Genome Browser Database is an up to date source for genome sequence data integrated with a large collection of related annotations. Expand
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Initial sequencing and comparative analysis of the mouse genome
The sequence of the mouse genome is a key informational tool for understanding the contents of the human genome and a key experimental tool for biomedical research. Here, we report the results of anExpand
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The UCSC genome browser database: update 2007
TLDR
This is an open access version of the Genome Browser Database (GBD) and a family of tools for accessing this database. Expand
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Knowledge-based analysis of microarray gene expression data by using support vector machines.
TLDR
We introduce a method of functionally classifying genes by using gene expression data from DNA microarray hybridization experiments. Expand
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The UCSC Genome Browser Database: update 2006
TLDR
The University of California Santa Cruz Genome Browser Database (GBD) contains sequence and annotation data for the genomes of about a dozen vertebrate species and several major model organisms. Expand
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Chromosome-scale shotgun assembly using an in vitro method for long-range linkage.
Long-range and highly accurate de novo assembly from short-read data is one of the most pressing challenges in genomics. Recently, it has been shown that read pairs generated by proximity ligation ofExpand
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Genomewide Analysis of mRNA Processing in Yeast Using Splicing-Specific Microarrays
Introns interrupt almost every eukaryotic protein-coding gene, yet how the splicing apparatus interprets the genome during messenger RNA (mRNA) synthesis is poorly understood. We designed microarraysExpand
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Transcriptome and Genome Conservation of Alternative Splicing Events in Humans and Mice
TLDR
Combining mRNA and EST data in splicing graphs with whole genome alignments, we discover alternative splicing events that are conserved in both human and mouse transcriptomes, with 2,698 total events. Expand
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