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Genome-wide association mapping reveals a rich genetic architecture of complex traits in Oryza sativa
Asian rice, Oryza sativa is a cultivated, inbreeding species that feeds over half of the world's population. Understanding the genetic basis of diverse physiological, developmental, and morphologicalExpand
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Genetic structure and domestication history of the grape
The grape is one of the earliest domesticated fruit crops and, since antiquity, it has been widely cultivated and prized for its fruit and wine. Here, we characterize genome-wide patterns of geneticExpand
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Genome-wide SNP and haplotype analyses reveal a rich history underlying dog domestication
Advances in genome technology have facilitated a new understanding of the historical and genetic processes crucial to rapid phenotypic evolution under domestication. To understand the process of dogExpand
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Molecular evidence for a single evolutionary origin of domesticated rice
Asian rice, Oryza sativa, is one of world's oldest and most important crop species. Rice is believed to have been domesticated ∼9,000 y ago, although debate on its origin remains contentious. AExpand
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PCAdmix: Principal Components-Based Assignment of Ancestry Along Each Chromosome in Individuals with Admixed Ancestry from Two or More Populations
Abstract Identifying ancestry along each chromosome in admixed individuals provides a wealth of information for understanding the population genetic history of admixture events and is valuable forExpand
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A Simple Genetic Architecture Underlies Morphological Variation in Dogs
The largest genetic study to date of morphology in domestic dogs identifies genes controlling nearly 100 morphological traits and identifies important trends in phenotypic variation within thisExpand
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Genomic Diversity and Introgression in O. sativa Reveal the Impact of Domestication and Breeding on the Rice Genome
Background The domestication of Asian rice (Oryza sativa) was a complex process punctuated by episodes of introgressive hybridization among and between subpopulations. Deep genetic divergence betweenExpand
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Development of genome-wide SNP assays for rice
Single nucleotide polymorphisms (SNPs) are the most abundant form of genetic variation in eukaryotic genomes. SNPs may be functionally responsible for specific traits or phenotypes, or they may beExpand
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Genome-wide patterns of population structure and admixture among Hispanic/Latino populations
Hispanic/Latino populations possess a complex genetic structure that reflects recent admixture among and potentially ancient substructure within Native American, European, and West African sourceExpand
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ALCHEMY: a reliable method for automated SNP genotype calling for small batch sizes and highly homozygous populations
TLDR
We develop a new genotype calling algorithm called ‘ALCHEMY’ based on statistical modeling of the raw intensity data rather than modelless clustering. Expand
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