Andrew James McKinlay

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We introduce the problem of detecting Entity Instantiations, a type of entity relation in which a set of entities is introduced, and either a member or subset of this set is mentioned afterwards. We perform the first, reliable, corpus study of Entity In-stantiations, concentrating on intersenten-tial annotation. We then develop the first automatic(More)
Very little is known about the role of epigenetics in the differentiation of a bacterium from the free-living to the symbiotic state. Here genome-wide analysis of DNA methylation changes between these states is described using the model of symbiosis between soybean and its root nodule-forming, nitrogen-fixing symbiont, Bradyrhizobium diazoefficiens. PacBio(More)
We apply tree kernels to entity instantiations. An entity instantiation is an entity relationship, in which a set of entities is mentioned, and then a member or subset of this set is introduced. We present the first reliably annotated intrasentential entity instantiation corpus, along with an extension to the intersentential annotations in McKinlay and(More)
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