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  • Andrea Amadei, Marc Antoine Ceruso, Alfredo di Nola
  • Chemistry, Medicine
  • Proteins
  • 1999 (First Publication: 1 September 1999)
  • In this article we present a quantitative evaluation of the convergence of the conformational coordinates of proteins, obtained by the Essential Dynamics method. Using a detailed analysis of longExpand
  • Daan M.F. van Aalten, Andrea Amadei, A B Linssen, V G Eijsink, Gert Vriend, Henk J.A. Berendsen
  • Chemistry, Medicine
  • Proteins
  • 1995 (First Publication: 1 May 1995)
  • Comparisons of the crystal structures of thermolysin and the thermolysin-like protease produced by B. cereus have recently led to the hypothesis that neutral proteases undergo a hinge-bending motion.Expand
  • Giorgio Colombo, Isabella Daidone, Ehud Gazit, Andrea Amadei, Alfredo di Nola
  • Chemistry, Medicine
  • Proteins
  • 2005 (First Publication: 18 March 2005)
  • The formation of amyloid fibrils is associated with major human diseases. Nevertheless, the molecular mechanism that directs the nucleation of these fibrils is not fully understood. Here, we usedExpand
  • Bert L. de Groot, Andrea Amadei, Daan M.F. van Aalten, Henk J.A. Berendsen
  • Chemistry, Medicine
  • Journal of biomolecular structure & dynamics
  • 1996 (First Publication: 1 April 1996)
  • The recently introduced Essential Dynamics sampling method is extended such that an exhaustive sampling of the available (backbone) configurational space can be achieved. From an initial MolecularExpand