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Mechanism of origin DNA recognition and assembly of an initiator-helicase complex by SV40 large tumor antigen.

• Yen-Jen Chang, Meng Xu, Ana Carolina Dantas Machado, Xian Jessica Yu, Remo Rohs, Xiaojiang S. Chen
• Cell reports
• 2013

The DNA tumor virus Simian virus 40 (SV40) is a model system for studying eukaryotic replication. SV40 large tumor antigen (LTag) is the initiator/helicase that is essential for genome replication.… (More)

DNA binding by GATA transcription factor suggests mechanisms of DNA looping and long-range gene regulation.

• Yongheng Chen, Darren L. Bates, +5 authors Lin Chen
• Cell reports
• 2012

GATA transcription factors regulate transcription during development and differentiation by recognizing distinct GATA sites with a tandem of two conserved zinc fingers, and by mediating long-range… (More)

DNAshape: a method for the high-throughput prediction of DNA structural features on a genomic scale

• Tianyin Zhou, Lin Yang, +5 authors Remo Rohs
• Nucleic Acids Research
• 2013

We present a method and web server for predicting DNA structural features in a high-throughput (HT) manner for massive sequence data. This approach provides the framework for the integration of DNA… (More)

Risk factors for stillbirths in two swine farms in the south of Brazil.

• T. J. Lucia, Marcio Nunes Corrêa, +5 authors Jairo E M Matheus
• Preventive veterinary medicine
• 2002

We evaluated stillbirth risk factors in two commercial swine farms of the Rio Grande do Sul State (south of Brazil). The study was conducted during 1 month in Farm A and during 2 months in Farm B,… (More)

Identification of the first antagonist peptide that inhibits biological effects of interleukin-15

• Alicia Santos, Osvaldo A Reyes, +18 authors Silvio E. Perea
• 2013

Interleukin-15 (IL-15) is a pro-infl ammatory cytokine that is expressed in several autoimmune and infl ammatory diseases. We have identifi ed the 36-45 sequence KVTAMKCFLL on human IL-15 that is… (More)

Microstructural Evaluation of Consolidated Modified SS 316L Powder.

• Omid Emadinia, Ana Carolina Dantas Machado, Ana R Farinha, Bruno Meira Castro Trindade, Maria Teresa Freire Vieira
• Microscopy and microanalysis : the official…
• 2015

Opposites Attract: Shape and Electrostatic Complementarity in Protein-DNA Complexes

• Robert C. Harris, Travis Mackoy, +4 authors Tamar Schlick
• 2012

Department of Physics and b Institute of Molecular Biophysics, Florida State University, Tallahassee, FL 32306, USA; Molecular and Computational Biology Program, Departments of Biological Sciences… (More)

Multimedia in Biochemistry and Molecular Biology Education Proteopedia: 3D Visualization and Annotation of Transcription Factor–DNA Readout Modes

• Ana Carolina Dantas Machado, Skyler B. Saleebyan, +9 authors Remo Rohs
• 2012

From the ‡Molecular and Computational Biology Program, Departments of Biological Sciences, Chemistry, and Physics and Astronomy, University of Southern California, 1050 Childs Way, Los Angeles,… (More)

Proteopedia: 3D visualization and annotation of transcription factor-DNA readout modes.

• Ana Carolina Dantas Machado, Skyler B. Saleebyan, +9 authors Remo Rohs
• Biochemistry and molecular biology education : a…
• 2012

3D visualization assists in identifying diverse mechanisms of protein-DNA recognition that can be observed for transcription factors and other DNA binding proteins. We used Proteopedia to illustrate… (More)

Mechanistic insights into metal ion activation and operator recognition by the ferric uptake regulator

• Zengqin Deng, Qing Wang, +16 authors Zhongzhou Chen
• Nature communications
• 2015

Ferric uptake regulator (Fur) plays a key role in the iron homeostasis of prokaryotes, such as bacterial pathogens, but the molecular mechanisms and structural basis of Fur-DNA binding remain… (More)

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