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- Adilson E. Motter, Alessandro P. S. de Moura, Ying-Cheng Lai, Partha Dasgupta
- Physical review. E, Statistical, nonlinear, andâ€¦
- 2002

We define two words in a language to be connected if they express similar concepts. The network of connections among the many thousands of words that make up a language is important not only for theâ€¦ (More)

- Renata Retkute, Conrad A. Nieduszynski, Alessandro P. S. de Moura
- Physical review letters
- 2011

We present a mathematical model for the spatial dynamics of DNA replication. Using this model we determine the probability distribution for the time at which each chromosomal position is replicated.â€¦ (More)

- Carolin A. MÃ¼ller, Michelle Hawkins, +8 authors Conrad A. Nieduszynski
- Nucleic acids research
- 2014

Eukaryotic genomes are replicated from multiple DNA replication origins. We present complementary deep sequencing approaches to measure origin location and activity in Saccharomyces cerevisiae.â€¦ (More)

- C. Komalapriya, Despoina Kaloriti, +14 authors Joy Sturtevant
- PloS one
- 2015

The major fungal pathogen of humans, Candida albicans, mounts robust responses to oxidative stress that are critical for its virulence. These responses counteract the reactive oxygen species (ROS)â€¦ (More)

- Alessandro P. S. de Moura, Ying-Cheng Lai, Richard Akis, Jonathan P. Bird, David K. Ferry
- Physical review letters
- 2002

We argue that many major features in electronic transport in realistic quantum dots are not explainable by the usual semiclassical approach, due to the contributions of the quantum-mechanicalâ€¦ (More)

- Ertan Ozyamak, Camila Bononi Almeida, Alessandro P. S. de Moura, Samantha K Miller, Ian R. Booth
- Molecular microbiology
- 2013

Methylglyoxal (MG) elicits activation of K(+) efflux systems to protect cells against the toxicity of the electrophile. ChIP-chip targeting RNA polymerase, supported by a range of other biochemicalâ€¦ (More)

- Chris A. Brackley, Oliver EbenhÃ¶h, +4 authors Marco Thiel
- Chaos
- 2010

The methods of nonlinear systems form an extensive toolbox for the study of biology, and systems biology provides a rich source of motivation for the development of new mathematical techniques andâ€¦ (More)

- Ying-Cheng Lai, Anil Kandangath, Satish Krishnamoorthy, John A. Gaudet, Alessandro P. S. de Moura
- Physical review letters
- 2005

We propose a scheme to induce chaos in nonlinear oscillators that either are by themselves incapable of exhibiting chaos or are far away from parameter regions of chaotic behaviors. Our idea is toâ€¦ (More)

- Alessandro P. S. de Moura
- Physical review. E, Statistical, nonlinear, andâ€¦
- 2005

We propose an idealized model for traffic in a network, in which many particles move randomly from node to node, following the network's links, and it is assumed that at most one particle can occupyâ€¦ (More)

- Alessandro P. S. de Moura
- Physical review. E, Statistical, nonlinear, andâ€¦
- 2004

We study a simple stochastic system with a "rich-get-richer" behavior, in which there are 2 states, and N particles that are successively assigned to one of the states, with a probability p(i) thatâ€¦ (More)