Abdulrhman Aljouie

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—The ranking of SNPs and prediction of phenotypes in continuous genome wide association studies is a subject of increasing interest with applications in personalized medicine and animal and plant breeding. The ranking of SNPs in case control (discrete label) genome wide association studies has been examined in several previous studies with machine learning(More)
—The era of genomics brings the potential of better DNA based risk prediction and treatment. While genome-wide association studies are extensively studied for risk prediction, the potential of using whole exome data for this purpose is unclear. We explore this problem for chronic lymphocytic leukemia that is one of the largest whole exome dataset of 186(More)
Determining interacting SNPs in genome-wide association studies is computationally expensive yet of considerable interest in genomics. We present a program Chi8 that calculates the Chi-square 8 degree of freedom test between all pairs of SNPs in a brute force manner on a Graphics Processing Unit. We analyze each of the seven WTCCC genome-wide association(More)
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